| MirGeneDB ID | Eca-Mir-652 |
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| Family name |
MIR-652 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-652
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| Paralogues |
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| Orthologues |
Bta-Mir-652
Cfa-Mir-652
Cja-Mir-652
Cpo-Mir-652
Dno-Mir-652
Ete-Mir-652
Hsa-Mir-652
Laf-Mir-652
Mml-Mir-652
Mmr-Mir-652
Mmu-Mir-652
Ocu-Mir-652
Pab-Mir-652
Rno-Mir-652
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009179.1: 90969690-90969751 [+]
UCSC
Ensembl
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| Seed |
AUGGCGC |
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Precursor
(pre-Mir +30nt flank) |
GCAGGGCUGCCACGAAUGGCUAUGCACUGCACAACCCUAGGAGAGGGUGCCAUUCACAUAGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGCAGUGCACAACCUACACAACUGUACUCGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCAGGGCUGCCACGAAU-| CUA GAGAG CAUAGA
GG UGCACUGCACAACCCUAG GGUGCCAUUCA \
CC ACGUGACGUGUUGGGAUC CCGCGGUAAGU C
CGGCUCAUGUCAACACAU^ AAC A---- UAAUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-652_5p* |
| mirBase accession | None |
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| Sequence |
0- ACAACCCUAGGAGAGGGUGCCAUUCA -26
Get sequence
|
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| Mature sequence |
Eca-Mir-652_3p |
| mirBase accession | MIMAT0013240 |
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| Sequence |
41- AAUGGCGCCACUAGGGUUGUG -62
Get sequence
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