| MirGeneDB ID | Pab-Mir-345 |
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| Family name |
MIR-345 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-345
Cfa-Mir-345
Cja-Mir-345
Cpo-Mir-345
Dno-Mir-345
Eca-Mir-345
Ete-Mir-345
Hsa-Mir-345
Laf-Mir-345-P1
Laf-Mir-345-P2
Laf-Mir-345-P3
Mml-Mir-345
Mmr-Mir-345
Mmu-Mir-345-v1
Rno-Mir-345
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 104732559-104732616 [+]
UCSC
Ensembl
|
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| Seed |
CUGACUC |
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Precursor
(pre-Mir +30nt flank) |
AUAUUAAGCAGAGACCCAAACCCUAGGUCUGCUGACUCCUAGUCCAGGGCUCGUGAUGGCUGGUGGGCCCUGAACGAGGGGUCUGGAGGCCUGGGUUUGAAUAUCGCCAGCCUCUCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUAUUAAGCAGAGACCC---| U G - A C GUGAU
AAACCC AGGUCU CU GACUCCU GU CAGGGCUC G
UUUGGG UCCGGA GG CUGGGGA CA GUCCCGGG G
GUCUCUCCGACCGCUAUAAG^ - - U G A UGGUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
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| Mature sequence |
Pab-Mir-345_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- GCUGACUCCUAGUCCAGGGCUC -22
Get sequence
|
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| Star sequence |
Pab-Mir-345_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
36- GCCCUGAACGAGGGGUCUGGAG -58
Get sequence
|
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