| MirGeneDB ID | Cpo-Mir-345 |
|---|
| Family name |
MIR-345 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-345
|
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| Paralogues |
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| Orthologues |
Bta-Mir-345
Cfa-Mir-345
Cja-Mir-345
Dno-Mir-345
Eca-Mir-345
Ete-Mir-345
Hsa-Mir-345
Laf-Mir-345-P1
Laf-Mir-345-P2
Laf-Mir-345-P3
Mml-Mir-345
Mmr-Mir-345
Mmu-Mir-345-v1
Pab-Mir-345
Rno-Mir-345
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(cavPor3) |
scaffold_111: 6113-6170 [+]
UCSC
|
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| Seed |
CUGACUC |
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Precursor
(pre-Mir +30nt flank) |
AUGCAAGGCCAGAGACCCAACCCCAGGGCUGCUGACUCCCAGUCCAGUGCUCGUGAUCCCAGCCGGGCCCUGAACUAGGGGUCUGGAGGCCUGGGUUUGAAUGUCGCCGGCCAGGCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGCAAGGCCAGAGACC--| C G G - C C U CGUGAU
CAA CCCAGG CU CU GACUCC AGU CAG GCU C
GUU GGGUCC GA GG CUGGGG UCA GUC CGG C
CCCGGACCGGCCGCUGUAA^ U G - U A A C GCCGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-345_5p |
| mirBase accession | MIMAT0047182 |
|---|
| Sequence |
0- GCUGACUCCCAGUCCAGUGCU -21
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-345_3p* |
| mirBase accession | MIMAT0047183 |
|---|
| Sequence |
37- CCCUGAACUAGGGGUCUGGAG -58
Get sequence
|
|---|
