MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-345

Family name MIR-345 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-345  Cfa-Mir-345  Cpo-Mir-345  Dno-Mir-345  Eca-Mir-345  Ete-Mir-345  Hsa-Mir-345  Laf-Mir-345-P1  Laf-Mir-345-P2  Laf-Mir-345-P3  Mml-Mir-345  Mmr-Mir-345  Mmu-Mir-345-v1  Pab-Mir-345  Rno-Mir-345 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131125121-131125178 [+] UCSC Ensembl
Seed CUGACUC
Precursor
(pre-Mir +30nt flank)		 
UGGUUAGGAAGAGACCCAAACCCUAGGUCUGCUGACUCCUAGUCCAGGGCUCGUGAUAGCUGGUGUGCCCUGAAUGAGGAGUCUGGAGGCCUGUGUUUGAAUAUCGCCACCCUCUCUC
Get precursor sequence
Structure
        10           20        30         40        50        
UGGUUAGGAAGAGACCC---|   CC       G  -       A  C      UCGUGAU 
                    AAAC  UAGGUCU CU GACUCCU GU CAGGGC       A
                    UUUG  GUCCGGA GG CUGAGGA UA GUCCCG       G
CUCUCUCCCACCGCUAUAAG^   U-       -  U       G  A      UGUGGUC 
      110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Cja-Mir-345_5p
mirBase accessionNone
Sequence 
0- GCUGACUCCUAGUCCAGGGCUC -22
Get sequence
Star sequence

Cja-Mir-345_3p* (predicted)
mirBase accessionNone
Sequence 
36- GCCCUGAAUGAGGAGUCUGGAG -58
Get sequence