| MirGeneDB ID | Bta-Mir-345 |
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| Family name |
MIR-345 (all species) |
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| Seed |
CCUGAAC |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-345
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| Paralogues |
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| Orthologues |
Cfa-Mir-345
Cpo-Mir-345
Dno-Mir-345
Ete-Mir-345
Hsa-Mir-345
Mml-Mir-345
Mmu-Mir-345
Rno-Mir-345
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037348.1: 65217727-65217784 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCAUUGAUCUGAGACCCAAACCCAGGUCUGCUGACUCCUAGUCCAGUGCUUGUGAUGGCUGGUGGGCCCUGAACUAGGGGUCUGGAGGCCUGGGUUUGAAUAUCACCAGCCUCUGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCCAUUGAUCUGAGACC--| G - C U UGUGAU
CAAACCCAGGUCU CU GACUCCUAGU CAG GCU G
GUUUGGGUCCGGA GG CUGGGGAUCA GUC CGG G
CAGUCUCCGACCACUAUAA^ - U A C GUGGUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-345_5p* |
| mirBase accession | MIMAT0003800 |
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| Sequence |
0- GCUGACUCCUAGUCCAGUGCU -21
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-345-5p
|
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| Mature sequence |
Bta-Mir-345_3p |
| mirBase accession | MIMAT0012535 |
|---|
| Sequence |
37- CCCUGAACUAGGGGUCUGGAG -58
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-345-3p
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