| MirGeneDB ID | Npo-Mir-133-P20 |
|---|---|
| Family name | MIR-133 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-133-P21 |
| Orthologues | Aae-Mir-133 Aga-Mir-133 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cin-Mir-133 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Lan-Mir-133 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Mgi-Mir-133 Mom-Mir-133 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pve-Mir-133 Rph-Mir-133 Sma-Mir-133 Snu-Mir-133 Spu-Mir-133 Tca-Mir-133 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 |
| Node of Origin (locus) | N. pompilius |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_018389105_NPO) |
JACATO010002176.1: 796507-796570 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-133-P20) |
Mir-133-P20
JACATO010002176.1: 796507-796570 [-]
Ensembl
Mir-133-P21 JACATO010002176.1: 796507-796570 [-] Ensembl Mir-1-P20 JACATO010002176.1: 801170-801230 [-] Ensembl |
| Seed | UGGUCCC |
| Precursor (pre-Mir +30nt flank) |
CCAACAAUCAAAGUGAGGCUGCUACUCUGUAGCUGGUUGAAAUCGGGCCAAAUUGUAUAAAACCAAAGGCAUUUGGUCCCCUUCAACCAGCUGUAGUUAGCAUUCCUUCCAACAGAGGGCUCUCGet precursor sequence |
| Structure | 10 20 30 40 50 60 CCAACAAUCAAAGUGAGGC---| CU AUC UGUAUAAA UGCUA CUGUAGCUGGUUGAA GGGCCAAAU \ ACGAU GAUGUCGACCAACUU CCUGGUUUA A CUCUCGGGAGACAACCUUCCUU^ U- CC- CGGAAACC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Npo-Mir-133-P20_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGCUGGUUGAAAUCGGGCCAAAU -23
Get sequence
|
| Mature sequence | Npo-Mir-133-P20_3p (predicted) |
| mirBase accession | None |
| Sequence |
42- UUGGUCCCCUUCAACCAGCUGU -64
Get sequence
|
