MirGeneDB 3.0
MirGeneDB ID

Mom-Mir-2-o85

Family name MIR-2 (all species)
Species Mossy chiton (Mopalia muscosa)
MiRBase ID
Paralogues Mom-Mir-2-o85-v1  Mom-Mir-2-o86  Mom-Mir-2-o88  Mom-Mir-2-o89  Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k 
Orthologues Agr-Mir-2-o85  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Polyplacophora
Node of Origin (family) Protostomia
Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)		 JARFOD010000037.1: 49292-49352 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o85-v2)		 Mir-71 JARFOD010000037.1: 48527-48588 [+] Ensembl
Mir-2-o85-v1 JARFOD010000037.1: 49292-49353 [+] Ensembl
Mir-2-o85-v2 JARFOD010000037.1: 49292-49352 [+] Ensembl
Mir-2-o88 JARFOD010000037.1: 52221-52280 [+] Ensembl
Mir-2-o89 JARFOD010000037.1: 52665-52722 [+] Ensembl
Variant

Mom-Mir-2-o85-v2
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
GACCAAAAGGGUGGCUUGUGACAUUCGUGGACGUCAAUGCUGGUAUGUAGUAGCCAGCUGACAAGCUCUAUCACAGCCAGCUUUGAUGAGCCAUGCCUGUCACCUAAUCAGCUUUAAUCAG
Get precursor sequence
Structure
        10         20        30         40        50        60
GACCAAAAGGGUGGCUU-      UU     A-|     U      A   A    CCAGCU 
                  GUGACA  CGUGG  CGUCAA GCUGGU UGU GUAG      G
                  CACUGU  GUACC  GUAGUU CGACCG ACA UAUC      A
GACUAAUUUCGACUAAUC      CC     GA^     U      -   C    UCGAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Mom-Mir-2-o85-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACGUCAAUGCUGGUAUGUAGUAGC -24
Get sequence
Mature sequence

Mom-Mir-2-o85-v2_3p
mirBase accessionNone
Sequence 
38- UAUCACAGCCAGCUUUGAUGAGC -61
Get sequence
Variant

Mom-Mir-2-o85-v1
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
GACCAAAAGGGUGGCUUGUGACAUUCGUGGACGUCAAUGCUGGUAUGUAGUAGCCAGCUGACAAGCUCUAUCACAGCCAGCUUUGAUGAGCCAUGCCUGUCACCUAAUCAGCUUUAAUCAGC
Get precursor sequence
Structure
        10          20        30         40        50        60
GACCAAAAGGGUGGCUU--      UU     A-|     U      A   A   GCCAGCU 
                   GUGACA  CGUGG  CGUCAA GCUGGU UGU GUA       G
                   CACUGU  GUACC  GUAGUU CGACCG ACA UAU       A
CGACUAAUUUCGACUAAUC      CC     GA^     U      -   C   CUCGAAC 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Mom-Mir-2-o85-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACGUCAAUGCUGGUAUGUAGUA -22
Get sequence
Mature sequence

Mom-Mir-2-o85-v1_3p
mirBase accessionNone
Sequence 
40- UCACAGCCAGCUUUGAUGAGCC -62
Get sequence