MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-92-o34

Family name MIR-92 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-92-o32  Mgi-Mir-92-o33  Mgi-Mir-92-o35 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. gigas
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold459: 311201-311262 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o34)		 Mir-92-o35 scaffold459: 310883-310941 [-] Ensembl
Mir-92-o34 scaffold459: 311201-311262 [-] Ensembl
Mir-92-o33 scaffold459: 320194-320253 [-] Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
GUUUAGAGAUAUUAGAAAGUCAUGCAAUGUAGGCUGUGAAAGGUAGCAAUCAUUUCAUGACGUUUACGUGAAUUGCACCUGUCCCGGCCUGCACUGGAUGUCGAUUACAACGGAGACCCGGA
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Structure
        10        20          30        40        50         60
GUUUAGAGAUAUUAGAAAGU--|  G  A         U  A    A     -   UUCAUG 
                      CAU CA UGUAGGCUG GA AGGU GCAAU CAU      A
                      GUA GU ACGUCCGGC CU UCCA CGUUA GUG      C
AGGCCCAGAGGCAACAUUAGCU^  G  C         C  G    -     A   CAUUUG 
120       110       100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-92-o34_5p*
mirBase accessionNone
Sequence 
0- AGGCUGUGAAAGGUAGCAAUCAUUUCA -27
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Mature sequence

Mgi-Mir-92-o34_3p
mirBase accessionNone
Sequence 
40- AAUUGCACCUGUCCCGGCCUGC -62
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