| MirGeneDB ID | Mgi-Mir-92-o32 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Species |
Pacific oyster (Magallana gigas) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Mgi-Mir-92-o33
Mgi-Mir-92-o34
Mgi-Mir-92-o35
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
C. gigas
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(CGI_GCA_000297895.1) |
C33654: 9471-9530 [+]
Ensembl
|
|---|
| Seed |
AUUGCAC |
|---|
Precursor
(pre-Mir +30nt flank) |
GGUUCCCUCUGCUGUAUCGACUUCCCCCAGAGACUGGGGAGGGUGAAAUGCAGUGCAUGCUCCUUCUGUAUUGCACCCGUCCCGGCCUGUGGGUGGGGCCAGUAUGUCGGCCAUUUUGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUUCCCUCUGCUGUAUCGAC- -| G A GA A GUGCAU
UUCC CCCA AG CUGGG GGGUG AAUGCA G
GGGG GGGU UC GGCCC CCCAC UUAUGU C
CUGUUUUACCGGCUGUAUGACC U^ G C UG G CUUCCU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Mgi-Mir-92-o32_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGACUGGGGAGGGUGAAAUGCA -22
Get sequence
|
|---|
| Mature sequence |
Mgi-Mir-92-o32_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UAUUGCACCCGUCCCGGCCUGU -60
Get sequence
|
|---|
