MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-7371-P6

Family name MIR-7371 (all species)
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7371f
Paralogues Mdo-Mir-7371-P1  Mdo-Mir-7371-P2a  Mdo-Mir-7371-P2b  Mdo-Mir-7371-P3  Mdo-Mir-7371-P4  Mdo-Mir-7371-P5  Mdo-Mir-7371-P7  Mdo-Mir-7371-P8-v1  Mdo-Mir-7371-P9  Mdo-Mir-7371-P10  Mdo-Mir-7371-P11a  Mdo-Mir-7371-P11b  Mdo-Mir-7371-P11c  Mdo-Mir-7371-P12  Mdo-Mir-7371-P13  Mdo-Mir-7371-P14  Mdo-Mir-7371-P15  Mdo-Mir-7371-P16  Mdo-Mir-7371-P17  Mdo-Mir-7371-P18  Mdo-Mir-7371-P19-v1  Mdo-Mir-7371-P20  Mdo-Mir-7371-P21  Mdo-Mir-7371-P22  Mdo-Mir-7371-P23  Mdo-Mir-7371-P24  Mdo-Mir-7371-P25  Mdo-Mir-7371-P26  Mdo-Mir-7371-P27  Mdo-Mir-7371-P28a  Mdo-Mir-7371-P28b  Mdo-Mir-7371-P30  Mdo-Mir-7371-P31  Mdo-Mir-7371-P32  Mdo-Mir-7371-P33  Mdo-Mir-7371-P34  Mdo-Mir-7371-P35  Mdo-Mir-7371-P36  Mdo-Mir-7371-P37  Mdo-Mir-7371-P38  Mdo-Mir-7371-P39 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
X: 38899297-38899358 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7371-P6)
Mir-7370 X: 38866830-38866888 [-] UCSC Ensembl
Mir-7371-P1 X: 38895437-38895494 [-] UCSC Ensembl
Mir-7371-P2a X: 38896648-38896704 [-] UCSC Ensembl
Mir-7371-P3 X: 38897274-38897334 [-] UCSC Ensembl
Mir-7371-P4 X: 38897921-38897979 [-] UCSC Ensembl
Mir-7371-P5 X: 38898553-38898610 [-] UCSC Ensembl
Mir-7371-P6 X: 38899297-38899358 [-] UCSC Ensembl
Mir-7371-P7 X: 38901020-38901081 [-] UCSC Ensembl
Mir-7371-P8-v1 X: 38901553-38901612 [-] UCSC Ensembl
Mir-7371-P8-v2 X: 38901553-38901612 [-] UCSC Ensembl
Mir-7371-P2b X: 38902124-38902180 [-] UCSC Ensembl
Mir-7371-P9 X: 38902981-38903043 [-] UCSC Ensembl
Seed AGAGCAU
Precursor
(pre-Mir +30nt flank)
CACUCUCUCACCAUAUCCUCCACUUUGCUUCCUUUGUAUAAGAUGCUCCAUUGUGUAAAUACCAUCAAAUAGAGCAUGCUUGUACAAAGAAAGUUAUUGGAGGUACAGCUCUCCACCAUAAA
Get precursor sequence
Structure
        10           20        30        40         50          
CACUCUCUCACCAUAUC---|    CUUU    C           -      C   GUGUAAA 
                    CUCCA    GCUU CUUUGUAUAAG AUGCUC AUU       \
                    GAGGU    UGAA GAAACAUGUUC UACGAG UAA       U
AAAUACCACCUCUCGACAUG^    UAU-    A           G      A   ACUACCA 
120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Ce He Ki Te
Star sequence

Mdo-Mir-7371-P6_5p*

mirBase accessionMIMAT0028784
Sequence
0- CCUUUGUAUAAGAUGCUCCAUU -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-7371f-5p
Mature sequence

Mdo-Mir-7371-P6_3p

mirBase accessionMIMAT0028785
Sequence
39- UAGAGCAUGCUUGUACAAAGAAA -62
Get sequence
Proposed targets TargetScanVert: mdo-miR-7371f-3p