MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-7371-P15

Family name MIR-7371 (all species)
Seed UGAUACA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7371n
Paralogues Mdo-Mir-7371-P1  Mdo-Mir-7371-P2a  Mdo-Mir-7371-P2b  Mdo-Mir-7371-P3  Mdo-Mir-7371-P4  Mdo-Mir-7371-P5  Mdo-Mir-7371-P6  Mdo-Mir-7371-P7  Mdo-Mir-7371-P8-v1  Mdo-Mir-7371-P8-v2  Mdo-Mir-7371-P9  Mdo-Mir-7371-P10  Mdo-Mir-7371-P11a  Mdo-Mir-7371-P11b  Mdo-Mir-7371-P11c  Mdo-Mir-7371-P12  Mdo-Mir-7371-P13  Mdo-Mir-7371-P14  Mdo-Mir-7371-P16  Mdo-Mir-7371-P17  Mdo-Mir-7371-P18  Mdo-Mir-7371-P19-v1  Mdo-Mir-7371-P19-v2  Mdo-Mir-7371-P20  Mdo-Mir-7371-P21  Mdo-Mir-7371-P22  Mdo-Mir-7371-P23  Mdo-Mir-7371-P24  Mdo-Mir-7371-P25  Mdo-Mir-7371-P26  Mdo-Mir-7371-P27  Mdo-Mir-7371-P28  Mdo-Mir-7371-P29  Mdo-Mir-7371-P30  Mdo-Mir-7371-P31  Mdo-Mir-7371-P32  Mdo-Mir-7371-P33  Mdo-Mir-7371-P34  Mdo-Mir-7371-P35  Mdo-Mir-7371-P36  Mdo-Mir-7371-P37  Mdo-Mir-7371-P38  Mdo-Mir-7371-P39 
Orthologues Sha-Mir-7371-o15 
Node of Origin (locus) M. domestica
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
X: 40476157-40476213 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7371-P15)
Mir-7371-P10 X: 40471896-40471952 [+] UCSC Ensembl
Mir-7371-P11a X: 40472059-40472118 [+] UCSC Ensembl
Mir-7371-P11b X: 40472371-40472430 [+] UCSC Ensembl
Mir-7371-P11c X: 40472534-40472593 [+] UCSC Ensembl
Mir-7371-P12 X: 40472741-40472796 [+] UCSC Ensembl
Mir-7371-P13 X: 40473856-40473914 [+] UCSC Ensembl
Mir-7371-P14 X: 40474430-40474488 [+] UCSC Ensembl
Mir-7371-P15 X: 40476157-40476213 [+] UCSC Ensembl
Mir-7371-P16 X: 40478031-40478092 [+] UCSC Ensembl
Mir-7371-P17 X: 40478197-40478256 [+] UCSC Ensembl
Mir-7371-P18 X: 40479473-40479530 [+] UCSC Ensembl
Mir-7371-P19-v2 X: 40481294-40481353 [+] UCSC Ensembl
Mir-7371-P19-v1 X: 40481295-40481352 [+] UCSC Ensembl
Mir-7371-P20 X: 40481839-40481897 [+] UCSC Ensembl
Mir-7371-P21 X: 40482902-40482958 [+] UCSC Ensembl
Mir-7371-P22 X: 40484389-40484445 [+] UCSC Ensembl
Mir-7371-P23 X: 40485434-40485493 [+] UCSC Ensembl
Mir-7371-P24 X: 40485588-40485645 [+] UCSC Ensembl
Mir-7371-P25 X: 40486320-40486378 [+] UCSC Ensembl
Mir-7371-P26 X: 40488023-40488080 [+] UCSC Ensembl
Mir-7371-P27 X: 40489393-40489449 [+] UCSC Ensembl
Mir-7371-P28 X: 40491868-40491926 [+] UCSC Ensembl
Mir-7371-P29 X: 40492022-40492080 [+] UCSC Ensembl
Mir-7371-P30 X: 40497148-40497205 [+] UCSC Ensembl
Mir-7371-P31 X: 40500913-40500970 [+] UCSC Ensembl
Mir-7371-P32 X: 40502424-40502481 [+] UCSC Ensembl
Mir-7371-P34 X: 40504971-40505028 [+] UCSC Ensembl
Mir-7371-P36 X: 40506274-40506332 [+] UCSC Ensembl
Mir-7371-P37 X: 40514662-40514726 [+] UCSC Ensembl
Mir-7371-P38 X: 40516163-40516222 [+] UCSC Ensembl
Mir-7371-P39 X: 40522765-40522822 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCCUGGCACCACACUCUCCCUCUGCCUCAGUUGUACCAGGUGUUACAUUUCAUAUAUGACAAAAUGAUACAUCUAGUGCAACGGUGGCCGUUGAGAAGAACUUCCAAGCCAGAAG
Get precursor sequence
Structure
        10           20        30        40        50        
UUUCCUGGCACCACACU---|  CCUCU   UCA       C      UA     CAUAU 
                    CUC     GCC   GUUGUAC AGGUGU  CAUUU     \
                    GAG     CGG   CAACGUG UCUACA  GUAAA     A
GAAGACCGAACCUUCAAGAA^  UUGC-   UGG       A      UA     ACAGU 
     110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-7371-P15_5p* (predicted)

mirBase accessionMIMAT0050409
Sequence
0- AGUUGUACCAGGUGUUACAUUU -22
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Mature sequence

Mdo-Mir-7371-P15_3p

mirBase accessionMIMAT0050410
Sequence
35- AUGAUACAUCUAGUGCAACGGU -57
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