Mir-7371-P15

MirGeneDB ID

Mdo-Mir-7371-P15

Family name

MIR-7371 (all species)

Seed

UGAUACA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7371n

Paralogues

Mdo-Mir-7371-P1 Mdo-Mir-7371-P2a Mdo-Mir-7371-P2b Mdo-Mir-7371-P3 Mdo-Mir-7371-P4 Mdo-Mir-7371-P5 Mdo-Mir-7371-P6 Mdo-Mir-7371-P7 Mdo-Mir-7371-P8-v1 Mdo-Mir-7371-P8-v2 Mdo-Mir-7371-P9 Mdo-Mir-7371-P10 Mdo-Mir-7371-P11a Mdo-Mir-7371-P11b Mdo-Mir-7371-P11c Mdo-Mir-7371-P12 Mdo-Mir-7371-P13 Mdo-Mir-7371-P14 Mdo-Mir-7371-P16 Mdo-Mir-7371-P17 Mdo-Mir-7371-P18 Mdo-Mir-7371-P19-v1 Mdo-Mir-7371-P19-v2 Mdo-Mir-7371-P20 Mdo-Mir-7371-P21 Mdo-Mir-7371-P22 Mdo-Mir-7371-P23 Mdo-Mir-7371-P24 Mdo-Mir-7371-P25 Mdo-Mir-7371-P26 Mdo-Mir-7371-P27 Mdo-Mir-7371-P28 Mdo-Mir-7371-P29 Mdo-Mir-7371-P30 Mdo-Mir-7371-P31 Mdo-Mir-7371-P32 Mdo-Mir-7371-P33 Mdo-Mir-7371-P34 Mdo-Mir-7371-P35 Mdo-Mir-7371-P36 Mdo-Mir-7371-P37 Mdo-Mir-7371-P38 Mdo-Mir-7371-P39

Orthologues

Sha-Mir-7371-o15

Node of Origin (locus)

M. domestica

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 40476157-40476213 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7371-P15)

Mir-7371-P10 X: 40471896-40471952 [+] UCSC Ensembl
Mir-7371-P11a X: 40472059-40472118 [+] UCSC Ensembl
Mir-7371-P11b X: 40472371-40472430 [+] UCSC Ensembl
Mir-7371-P11c X: 40472534-40472593 [+] UCSC Ensembl
Mir-7371-P12 X: 40472741-40472796 [+] UCSC Ensembl
Mir-7371-P13 X: 40473856-40473914 [+] UCSC Ensembl
Mir-7371-P14 X: 40474430-40474488 [+] UCSC Ensembl
Mir-7371-P15 X: 40476157-40476213 [+] UCSC Ensembl
Mir-7371-P16 X: 40478031-40478092 [+] UCSC Ensembl
Mir-7371-P17 X: 40478197-40478256 [+] UCSC Ensembl
Mir-7371-P18 X: 40479473-40479530 [+] UCSC Ensembl
Mir-7371-P19-v2 X: 40481294-40481353 [+] UCSC Ensembl
Mir-7371-P19-v1 X: 40481295-40481352 [+] UCSC Ensembl
Mir-7371-P20 X: 40481839-40481897 [+] UCSC Ensembl
Mir-7371-P21 X: 40482902-40482958 [+] UCSC Ensembl
Mir-7371-P22 X: 40484389-40484445 [+] UCSC Ensembl
Mir-7371-P23 X: 40485434-40485493 [+] UCSC Ensembl
Mir-7371-P24 X: 40485588-40485645 [+] UCSC Ensembl
Mir-7371-P25 X: 40486320-40486378 [+] UCSC Ensembl
Mir-7371-P26 X: 40488023-40488080 [+] UCSC Ensembl
Mir-7371-P27 X: 40489393-40489449 [+] UCSC Ensembl
Mir-7371-P28 X: 40491868-40491926 [+] UCSC Ensembl
Mir-7371-P29 X: 40492022-40492080 [+] UCSC Ensembl
Mir-7371-P30 X: 40497148-40497205 [+] UCSC Ensembl
Mir-7371-P31 X: 40500913-40500970 [+] UCSC Ensembl
Mir-7371-P32 X: 40502424-40502481 [+] UCSC Ensembl
Mir-7371-P34 X: 40504971-40505028 [+] UCSC Ensembl
Mir-7371-P36 X: 40506274-40506332 [+] UCSC Ensembl
Mir-7371-P37 X: 40514662-40514726 [+] UCSC Ensembl
Mir-7371-P38 X: 40516163-40516222 [+] UCSC Ensembl
Mir-7371-P39 X: 40522765-40522822 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCCUGGCACCACACUCUCCCUCUGCCUCAGUUGUACCAGGUGUUACAUUUCAUAUAUGACAAAAUGAUACAUCUAGUGCAACGGUGGCCGUUGAGAAGAACUUCCAAGCCAGAAG

Get precursor sequence

Structure

        10           20        30        40        50        
UUUCCUGGCACCACACU---|  CCUCU   UCA       C      UA     CAUAU 
                    CUC     GCC   GUUGUAC AGGUGU  CAUUU     \
                    GAG     CGG   CAACGUG UCUACA  GUAAA     A
GAAGACCGAACCUUCAAGAA^  UUGC-   UGG       A      UA     ACAGU 
     110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-7371-P15_5p* (predicted)

mirBase accession

MIMAT0050409

Sequence

0- AGUUGUACCAGGUGUUACAUUU -22

Get sequence

Mature sequence

Mdo-Mir-7371-P15_3p

mirBase accession

MIMAT0050410

Sequence

35- AUGAUACAUCUAGUGCAACGGU -57

Get sequence