Mir-7371-P31

MirGeneDB ID

Mdo-Mir-7371-P31

Family name

MIR-7371 (all species)

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7386n

Paralogues

Mdo-Mir-7371-P1 Mdo-Mir-7371-P2a Mdo-Mir-7371-P2b Mdo-Mir-7371-P3 Mdo-Mir-7371-P4 Mdo-Mir-7371-P5 Mdo-Mir-7371-P6 Mdo-Mir-7371-P7 Mdo-Mir-7371-P8-v1 Mdo-Mir-7371-P9 Mdo-Mir-7371-P10 Mdo-Mir-7371-P11a Mdo-Mir-7371-P11b Mdo-Mir-7371-P11c Mdo-Mir-7371-P12 Mdo-Mir-7371-P13 Mdo-Mir-7371-P14 Mdo-Mir-7371-P15 Mdo-Mir-7371-P16 Mdo-Mir-7371-P17 Mdo-Mir-7371-P18 Mdo-Mir-7371-P19-v1 Mdo-Mir-7371-P20 Mdo-Mir-7371-P21 Mdo-Mir-7371-P22 Mdo-Mir-7371-P23 Mdo-Mir-7371-P24 Mdo-Mir-7371-P25 Mdo-Mir-7371-P26 Mdo-Mir-7371-P27 Mdo-Mir-7371-P28a Mdo-Mir-7371-P28b Mdo-Mir-7371-P30 Mdo-Mir-7371-P32 Mdo-Mir-7371-P33 Mdo-Mir-7371-P34 Mdo-Mir-7371-P35 Mdo-Mir-7371-P36 Mdo-Mir-7371-P37 Mdo-Mir-7371-P38 Mdo-Mir-7371-P39

Orthologues

Neu-Mir-7371-o31-v1

Node of Origin (locus)

M. domestica

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 40500913-40500970 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7371-P31)

Mir-7371-P10 X: 40471896-40471952 [+] UCSC Ensembl
Mir-7371-P11a X: 40472059-40472118 [+] UCSC Ensembl
Mir-7371-P11b X: 40472371-40472430 [+] UCSC Ensembl
Mir-7371-P11c X: 40472534-40472593 [+] UCSC Ensembl
Mir-7371-P12 X: 40472741-40472796 [+] UCSC Ensembl
Mir-7371-P13 X: 40473856-40473914 [+] UCSC Ensembl
Mir-7371-P14 X: 40474430-40474488 [+] UCSC Ensembl
Mir-7371-P15 X: 40476157-40476213 [+] UCSC Ensembl
Mir-7371-P16 X: 40478031-40478092 [+] UCSC Ensembl
Mir-7371-P17 X: 40478197-40478256 [+] UCSC Ensembl
Mir-7371-P18 X: 40479473-40479530 [+] UCSC Ensembl
Mir-7371-P19-v2 X: 40481294-40481353 [+] UCSC Ensembl
Mir-7371-P19-v1 X: 40481295-40481352 [+] UCSC Ensembl
Mir-7371-P20 X: 40481839-40481897 [+] UCSC Ensembl
Mir-7371-P21 X: 40482902-40482958 [+] UCSC Ensembl
Mir-7371-P22 X: 40484389-40484445 [+] UCSC Ensembl
Mir-7371-P23 X: 40485434-40485493 [+] UCSC Ensembl
Mir-7371-P24 X: 40485588-40485645 [+] UCSC Ensembl
Mir-7371-P25 X: 40486320-40486378 [+] UCSC Ensembl
Mir-7371-P26 X: 40488023-40488080 [+] UCSC Ensembl
Mir-7371-P27 X: 40489393-40489449 [+] UCSC Ensembl
Mir-7371-P28a X: 40491868-40491926 [+] UCSC Ensembl
Mir-7371-P28b X: 40492022-40492080 [+] UCSC Ensembl
Mir-7371-P30 X: 40497148-40497205 [+] UCSC Ensembl
Mir-7371-P31 X: 40500913-40500970 [+] UCSC Ensembl
Mir-7371-P32 X: 40502424-40502481 [+] UCSC Ensembl
Mir-7371-P33 X: 40504141-40504198 [+] UCSC Ensembl
Mir-7371-P34 X: 40504971-40505028 [+] UCSC Ensembl
Mir-7371-P36 X: 40506274-40506332 [+] UCSC Ensembl
Mir-7371-P37 X: 40514662-40514726 [+] UCSC Ensembl
Mir-7371-P38 X: 40516163-40516222 [+] UCSC Ensembl
Mir-7371-P39 X: 40522765-40522822 [+] UCSC Ensembl
Mir-7371-P35 X: 40524114-40524173 [+] UCSC Ensembl

Seed

GUAAGGG

Precursor
(pre-Mir +30nt flank)

GUCCCAACACCAUCCCUUCCAGUAGCCCUGGGUGGAUAAGUCACUUUACUUUGUGCAUUCUUUCAAAAGUAAGGGCCUUAUCCAUAGAGGCUGCUGGGAAAGAACUUACCAGCCAAAC

Get precursor sequence

Structure

        10           20         30        40        50         
GUCCCAACACCAUCCCU---          -| GG         UCA         GUGCAU 
                    UCCAGUAGCC CU  GUGGAUAAG   CUUUACUUU      \
                    GGGUCGUCGG GA  UACCUAUUC   GGAAUGAAA      U
CAAACCGACCAUUCAAGAAA          A^ --         CG-         ACUUUC 
      110       100        90          80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut on the 5p arm -1.

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-7371-P31_5p*

mirBase accession

MIMAT0028864

Sequence

0- GGUGGAUAAGUCACUUUACUUU -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7386n-5p

Mature sequence

Mdo-Mir-7371-P31_3p

mirBase accession

MIMAT0028865

Sequence

37- AGUAAGGGCCUUAUCCAUAGA -58

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7386n-3p