MirGeneDB ID | Mdo-Mir-1251 |
Family name |
MIR-1251 (all species) |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-1251
|
Paralogues |
|
Orthologues |
Bta-Mir-1251
Cfa-Mir-1251
Cja-Mir-1251
Cpo-Mir-1251
Dno-Mir-1251
Eca-Mir-1251
Ete-Mir-1251
Hsa-Mir-1251
Laf-Mir-1251
Mml-Mir-1251
Mmr-Mir-1251
Mmu-Mir-1251
Neu-Mir-1251
Ocu-Mir-1251
Pab-Mir-1251
Rno-Mir-1251
Sha-Mir-1251
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (monDom5_add) |
8: 74781632-74781690 [+]
UCSC
Ensembl
|
Seed |
CUCUAGC |
Precursor (pre-Mir +30nt flank) |
CUUCCCUCCCCCAACAGAUCAGCUAUGUAGACUCUAGCUGACUAAGGCGCUUCUCUUUCUAAAAAGAGCGCUUUACUUAGCCAGUGUAGACAUGGCCUGGUAAAUAUUGGAACCACUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUCCCUCCCCCAACAG- -| AG U A C UCUCUUU
AUCA GCUAUGU AC CU GCUGA UAAGGCGCU \
UGGU CGGUACA UG GA CGAUU AUUUCGCGA C
CUUCACCAAGGUUAUAAA C^ GA U C C GAAAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Mdo-Mir-1251_5p |
mirBase accession | MIMAT0028700 |
Sequence |
0- ACUCUAGCUGACUAAGGCGCU -21
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-1251-5p
|
Star sequence |
Mdo-Mir-1251_3p* |
mirBase accession | MIMAT0028701 |
Sequence |
38- CGCUUUACUUAGCCAGUGUAG -59
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-1251-3p
|