MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-133-P13

Family name MIR-133 (all species)
Seed UGGUCCC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-133-P11  Lpo-Mir-133-P12  Lpo-Mir-133-P14  Lpo-Mir-133-P15 
Orthologues Aae-Mir-133  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cgi-Mir-133  Cin-Mir-133  Cte-Mir-133  Dan-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Efe-Mir-133  Esc-Mir-133  Hme-Mir-133  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Obi-Mir-133  Ovu-Mir-133  Spu-Mir-133  Tca-Mir-133  Xbo-Mir-133 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013666362.1: 110073-110136 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUGAUACGUCUAUGGCAUGCUAAGCUUUAGUUGGUUGACACUGGGCCAAAUUGGCCUAGCCUCACUCCAUUUGGUCCCCUUCAACCAACUGUAGCUGGCAUUCUCGACAGCAUAACGUCACG
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Structure
        10           20        30        40        50        60  
UUGUGAUACGUCUAUGGC---|     A   U           CACU         UGGCCUAG 
                     AUGCUA GCU UAGUUGGUUGA    GGGCCAAAU        \
                     UACGGU CGA GUCAACCAACU    CCUGGUUUA        C
GCACUGCAAUACGACAGCUCU^     -   U           UCC-         CCUCACUC 
  120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-133-P13_5p*

mirBase accessionNone
Sequence
0- AGUUGGUUGACACUGGGCCAAAU -23
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Mature sequence

Lpo-Mir-133-P13_3p

mirBase accessionNone
Sequence
42- UUGGUCCCCUUCAACCAACUGU -64
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