MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-147

Family name MIR-147 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-147-v1 
Orthologues Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Eca-Mir-147  Gga-Mir-147  Lch-Mir-147  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pma-Mir-147  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG3: 39226443-39226503 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-147-v2)
Mir-147-v2 LG3: 39226443-39226503 [-] Ensembl
Mir-147-v1 LG3: 39226444-39226502 [-] Ensembl
Variant

Loc-Mir-147-v2

Seed ACGGAAU
Precursor
(pre-Mir +30nt flank)
UCCACCAGCCUGCCUGCACCCUAUCAAUCUAACGGAAUCAUUUCUGCACAGACUAGACUCUGAGAACCAGUGUGCGGAAAUGCUUCUGCUACAUUGGUAGGGUCUGACCACCAACAGGUCU
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Structure
        10         20        30        40        50        60
UCCACCAGCCUGCCUGC-|          C  A     U            GACUAGACU 
                  ACCCUAUCAAU UA CGGAA CAUUUCUGCACA         C
                  UGGGAUGGUUA AU GUCUU GUAAAGGCGUGU         U
UCUGGACAACCACCAGUC^          C  C     C            GACCAAGAG 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-147-v2_5p

mirBase accessionNone
Sequence
0- AACGGAAUCAUUUCUGCACAGACU -24
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Star sequence

Loc-Mir-147-v2_3p*

mirBase accessionNone
Sequence
39- GUGUGCGGAAAUGCUUCUGCUA -61
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Variant

Loc-Mir-147-v1

Seed CGGAAUC
Precursor
(pre-Mir +30nt flank)
CCACCAGCCUGCCUGCACCCUAUCAAUCUAACGGAAUCAUUUCUGCACAGACUAGACUCUGAGAACCAGUGUGCGGAAAUGCUUCUGCUACAUUGGUAGGGUCUGACCACCAACAGGUC
Get precursor sequence
Structure
        10         20        30        40        50         
CCACCAGCCUGCCUGCA-|         C  A     U            GACUAGACU 
                  CCCUAUCAAU UA CGGAA CAUUUCUGCACA         C
                  GGGAUGGUUA AU GUCUU GUAAAGGCGUGU         U
CUGGACAACCACCAGUCU^         C  C     C            GACCAAGAG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-147-v1_5p

mirBase accessionNone
Sequence
0- ACGGAAUCAUUUCUGCACAGACU -23
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Star sequence

Loc-Mir-147-v1_3p*

mirBase accessionNone
Sequence
38- GUGUGCGGAAAUGCUUCUGCU -59
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