MirGeneDB ID | Loc-Mir-147-v2 |
Family name |
MIR-147 (all species) |
Seed |
ACGGAAU |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-147-v1
|
Orthologues |
Aca-Mir-147-v2
Ami-Mir-147-v2
Bta-Mir-147
Cli-Mir-147
Cmi-Mir-147
Cpi-Mir-147-v2
Cpo-Mir-147-v2
Dno-Mir-147-v2
Gga-Mir-147
Hsa-Mir-147-v2
Lch-Mir-147
Mal-Mir-147-v2
Mdo-Mir-147
Mml-Mir-147
Mmu-Mir-147-v2
Oan-Mir-147
Ocu-Mir-147
Pbv-Mir-147-v2
Pma-Mir-147
Rno-Mir-147-v2
Spt-Mir-147
Tgu-Mir-147
Tni-Mir-147
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG3: 39226443-39226503 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCACCAGCCUGCCUGCACCCUAUCAAUCUAACGGAAUCAUUUCUGCACAGACUAGACUCUGAGAACCAGUGUGCGGAAAUGCUUCUGCUACAUUGGUAGGGUCUGACCACCAACAGGUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCCACCAGCCUGCCUGC-| C A U GACUAGACU
ACCCUAUCAAU UA CGGAA CAUUUCUGCACA C
UGGGAUGGUUA AU GUCUU GUAAAGGCGUGU U
UCUGGACAACCACCAGUC^ C C C GACCAAGAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-147-v2_5p |
mirBase accession | None |
Sequence |
0- AACGGAAUCAUUUCUGCACAGACU -24
Get sequence
|
Star sequence |
Loc-Mir-147-v2_3p* |
mirBase accession | None |
Sequence |
39- GUGUGCGGAAAUGCUUCUGCUA -61
Get sequence
|