Mir-483-v1

MirGeneDB ID

Eca-Mir-483

Family name

MIR-483 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-483

Paralogues

Orthologues

Bta-Mir-483-v1 Cfa-Mir-483 Cja-Mir-483 Cpo-Mir-483 Dno-Mir-483 Ete-Mir-483 Hsa-Mir-483 Mml-Mir-483 Mmr-Mir-483 Mmu-Mir-483 Neu-Mir-483 Ocu-Mir-483 Pab-Mir-483 Rno-Mir-483 Sha-Mir-483

Node of Origin (locus)

Theria

Node of Origin (family)

Theria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009159.1: 34440828-34440889 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-483-v1)

Mir-483-v1 CM009159.1: 34440828-34440889 [-] UCSC Ensembl
Mir-483-v2 CM009159.1: 34440828-34440889 [-] UCSC Ensembl

Variant

Eca-Mir-483-v1

Seed

ACUCCUC

Precursor
(pre-Mir +30nt flank)

GCCUUGGAGCCUGUGGUGGGGGAGCGGGGGAGGACGGGAGGGGAGGAGGGCGUGGUUUUAUGCAGCUCCUCACUCCUCUCCUCCCGUCUUCUUCUUCUUCCUCCCAUUCCUGCCUGUCUCGG

Get precursor sequence

Structure

        10          20        30        40         50          
GCCUUGGAGCCUGUGGU--       C                       -| CGUGGUUUU 
                   GGGGGAG GGGGGAGGACGGGAGGGGAGGAG GG         \
                   CUCCUUC UCUUCUUCUGCCCUCCUCUCCUC CU         A
GGCUCUGUCCGUCCUUACC       U                       A^ CCUCGACGU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-483-v1_5p*

mirBase accession

None

Sequence

0- AGGACGGGAGGGGAGGAGGGCG -22

Get sequence

Mature sequence

Eca-Mir-483-v1_3p

mirBase accession

MIMAT0034670

Sequence

40- CACUCCUCUCCUCCCGUCUUCU -62

Get sequence

Variant

Eca-Mir-483-v2

Seed

CACUCCU

Precursor
(pre-Mir +30nt flank)

GCCUUGGAGCCUGUGGUGGGGGAGCGGGGGAGGACGGGAGGGGAGGAGGGCGUGGUUUUAUGCAGCUCCUCACUCCUCUCCUCCCGUCUUCUUCUUCUUCCUCCCAUUCCUGCCUGUCUCGG

Get precursor sequence

Structure

        10          20        30        40         50          
GCCUUGGAGCCUGUGGU--       C                       -| CGUGGUUUU 
                   GGGGGAG GGGGGAGGACGGGAGGGGAGGAG GG         \
                   CUCCUUC UCUUCUUCUGCCCUCCUCUCCUC CU         A
GGCUCUGUCCGUCCUUACC       U                       A^ CCUCGACGU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-483-v2_5p*

mirBase accession

None

Sequence

0- AGGACGGGAGGGGAGGAGGGCGU -23

Get sequence

Mature sequence

Eca-Mir-483-v2_3p

mirBase accession

MIMAT0034670

Sequence

39- UCACUCCUCUCCUCCCGUCUUCU -62

Get sequence