MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-724-P1

Family name MIR-724 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues Dre-Mir-724-P1-v1  Dre-Mir-724-P2-v1 
Orthologues Gmo-Mir-724-P1-v1  Mal-Mir-724-P1-v1  Tni-Mir-724-P1-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Neopterygii
Genome context
(danRer11)
chr8: 24064224-24064283 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-724-P1-v2)
Mir-724-P1-v1 chr8: 24064223-24064284 [+] UCSC Ensembl
Mir-724-P1-v2 chr8: 24064224-24064283 [+] UCSC Ensembl
Variant

Dre-Mir-724-P1-v2

Seed AAAGGGA
Precursor
(pre-Mir +30nt flank)
CGCUGAUACUGUUACCCAGCAGACUGGAUUUAAAGGGAAUUUGCGACUGUUUAGUCACAUUAUUAGAACAGCCACACCUUCCUUUUAAGAUCUUGCCUGCUGCUCUGUCUCUUCUGCAGC
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Structure
        10          20        30         40        50         
CGCUGAUACUGUUACCC--     ACU     -|        UU  CGA      AGUCAC 
                   AGCAG   GGAUU UAAAGGGAA  UG   CUGUUU      \
                   UCGUC   UCUAG AUUUUCCUU  AC   GACAAG      A
CGACGUCUUCUCUGUCUCG     CGU     A^        CC  ACC      AUUAUU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-724-P1-v2_5p

mirBase accessionNone
Sequence
0- UAAAGGGAAUUUGCGACUGUUU -22
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Star sequence

Dre-Mir-724-P1-v2_3p*

mirBase accessionNone
Sequence
37- ACAGCCACACCUUCCUUUUAAGA -60
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Variant

Dre-Mir-724-P1-v1

Seed UAAAGGG
Precursor
(pre-Mir +30nt flank)
GCGCUGAUACUGUUACCCAGCAGACUGGAUUUAAAGGGAAUUUGCGACUGUUUAGUCACAUUAUUAGAACAGCCACACCUUCCUUUUAAGAUCUUGCCUGCUGCUCUGUCUCUUCUGCAGCC
Get precursor sequence
Structure
        10          20        30         40        50          
GCGCUGAUACUGUUACC--      ACU     -|        UU  CGA     UAGUCAC 
                   CAGCAG   GGAUU UAAAGGGAA  UG   CUGUU       \
                   GUCGUC   UCUAG AUUUUCCUU  AC   GACAA       A
CCGACGUCUUCUCUGUCUC      CGU     A^        CC  ACC     GAUUAUU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-724-P1-v1_5p

mirBase accessionNone
Sequence
0- UUAAAGGGAAUUUGCGACUGUU -22
Get sequence
Star sequence

Dre-Mir-724-P1-v1_3p*

mirBase accessionNone
Sequence
39- CAGCCACACCUUCCUUUUAAGAU -62
Get sequence