MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-455-P1

Family name MIR-455 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-455-1
Paralogues Dre-Mir-455-P1-v1  Dre-Mir-455-P2-v1 
Orthologues Gja-Mir-455  Gmo-Mir-455-P1-v1  Lch-Mir-455  Mal-Mir-455-P1-v1  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Tni-Mir-455-P1-v1  Xtr-Mir-455 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr5: 65250401-65250460 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-P1-v2)		 Mir-455-P1-v2 chr5: 65250401-65250460 [-] UCSC Ensembl
Mir-455-P1-v3 chr5: 65250401-65250460 [-] UCSC Ensembl
Mir-455-P1-v1 chr5: 65250402-65250459 [-] UCSC Ensembl
Variant

Dre-Mir-455-P1-v2
Seed CAGUCCA
Precursor
(pre-Mir +30nt flank)		 
CCGAAUGCCCGUGUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAGAUCUUCACCGAGCG
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Structure
        10          20        30        40        50         
CCGAAUGCCCGUGUGAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
GCGAGCCACUUCUAGAUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-455-P1-v2_5p*
mirBase accessionMIMAT0001879
Sequence 
0- GUAUGUGCCCUUGGACUACAU -21
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Proposed targets TargetScanFish: dre-miR-455
Mature sequence

Dre-Mir-455-P1-v2_3p
mirBase accessionMIMAT0031993
Sequence 
39- GCAGUCCAUGGGCAUAUACAC -60
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Variant

Dre-Mir-455-P1-v1
Seed AUGUGCC
Precursor
(pre-Mir +30nt flank)		 
CGAAUGCCCGUGUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAGAUCUUCACCGAGC
Get precursor sequence
Structure
        10          20        30        40        50        
CGAAUGCCCGUGUGAUC-  -|  U UG  G          U      A   C UGGAA 
                  CC UGG G  AG GUAUGUGCCC UGGACU CAU G     G
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     C
CGAGCCACUUCUAGAUCC  A^  C GU  A          U      C   C ACGAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-455-P1-v1_5p
mirBase accessionMIMAT0001879
Sequence 
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
Proposed targets TargetScanFish: dre-miR-455
Star sequence

Dre-Mir-455-P1-v1_3p*
mirBase accessionMIMAT0031993
Sequence 
36- AUGCAGUCCAUGGGCAUAUACA -58
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Variant

Dre-Mir-455-P1-v3
Seed GCAGUCC
Precursor
(pre-Mir +30nt flank)		 
CCGAAUGCCCGUGUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAGAUCUUCACCGAGCG
Get precursor sequence
Structure
        10          20        30        40        50         
CCGAAUGCCCGUGUGAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
GCGAGCCACUUCUAGAUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-455-P1-v3_5p*
mirBase accessionMIMAT0001879
Sequence 
0- GUAUGUGCCCUUGGACUACAUC -22
Get sequence
Proposed targets TargetScanFish: dre-miR-455
Mature sequence

Dre-Mir-455-P1-v3_3p
mirBase accessionMIMAT0031993
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence