MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-92-o36

Family name MIR-92 (all species)
Seed AUUGCAC
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-92b
Paralogues Cte-Mir-92-o37  Cte-Mir-92-o38 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. teleta
Node of Origin (family) Bilateria
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_14: 595238-595297 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o36)
Mir-92-o38 CAPTEscaffold_14: 594225-594286 [-] Ensembl
Mir-92-o37 CAPTEscaffold_14: 594348-594403 [-] Ensembl
Mir-92-o36 CAPTEscaffold_14: 595238-595297 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGACCACCGCAUGGCGUCGUUGAAUCGGAGGGUCCGGAUGGUGCAAGUUGUUAAAACAAGUUGGUCAAAUUGCACUGUUCCCGGCCUGCUGAUCUCACUCGGCCGAUAACAGCUUAUCA
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Structure
        10        20          30         40        50         
GUGACCACCGCAUGGCGU  U-   -     A     C  -|        G   UUAAAAC 
                  CG  UGA AUCGG GGGUC GG AUGGUGCAA UUG       \
                  GC  ACU UAGUC UCCGG CC UGUCACGUU AAC       A
ACUAUUCGACAAUAGCCG  UC   C     G     C  U^        A   UGGUUGA 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Cte-Mir-92-o36_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGUCCGGAUGGUGCAAGUUG -21
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Mature sequence

Cte-Mir-92-o36_3p

mirBase accessionMIMAT0009521
Sequence
38- AAUUGCACUGUUCCCGGCCUGC -60
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