Mir-92-o36

MirGeneDB ID

Cte-Mir-92-o36

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-92b

Paralogues

Cte-Mir-92-o37 Cte-Mir-92-o38

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

C. teleta

Node of Origin (family)

Bilateria

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_14: 595238-595297 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o36)

Mir-92-o38 CAPTEscaffold_14: 594225-594286 [-] Ensembl
Mir-92-o37 CAPTEscaffold_14: 594348-594403 [-] Ensembl
Mir-92-o36 CAPTEscaffold_14: 595238-595297 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GUGACCACCGCAUGGCGUCGUUGAAUCGGAGGGUCCGGAUGGUGCAAGUUGUUAAAACAAGUUGGUCAAAUUGCACUGUUCCCGGCCUGCUGAUCUCACUCGGCCGAUAACAGCUUAUCA

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Structure

        10        20          30         40        50         
GUGACCACCGCAUGGCGU  U-   -     A     C  -|        G   UUAAAAC 
                  CG  UGA AUCGG GGGUC GG AUGGUGCAA UUG       \
                  GC  ACU UAGUC UCCGG CC UGUCACGUU AAC       A
ACUAUUCGACAAUAGCCG  UC   C     G     C  U^        A   UGGUUGA 
.       110       100        90        80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.

3' NTU

Motifs

Tissue expression

To

Star sequence

Cte-Mir-92-o36_5p* (predicted)

mirBase accession

None

Sequence

0- GGGUCCGGAUGGUGCAAGUUG -21

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Mature sequence

Cte-Mir-92-o36_3p

mirBase accession

MIMAT0009521

Sequence

38- AAUUGCACUGUUCCCGGCCUGC -60

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