MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-1842

Family name MIR-1842 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-1842
Paralogues
Orthologues Bta-Mir-1842-v1  Cfa-Mir-1842-v1  Dno-Mir-1842-v1  Eca-Mir-1842-v1  Mmr-Mir-1842-v1  Ocu-Mir-1842 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_4: 22299160-22299220 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-1842-v1)		 Mir-1842-v1 scaffold_4: 22299160-22299220 [-] UCSC
Mir-1842-v2 scaffold_4: 22299160-22299219 [-] UCSC
Variant

Cpo-Mir-1842-v1
Seed UGGCUCU
Precursor
(pre-Mir +30nt flank)		 
GCCAUGCCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGCGAGGUCGGCUCAAGGUGGGUCUUGAUAUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACACAGCAGGUGC
Get precursor sequence
Structure
        10          20        30        40        50        60
GCCAUGCCUGUGAGGUU--|   GUGC     UUG      CG     G     AGGUGGG 
                   GGUG    UGACG   GCUCUG  AGGUC GCUCA       U
                   CCAC    ACUGU   CGGGAC  UCCGG CGAGU       C
CGUGGACGACACACGAGGA^   ACCC     UG-      UG     A     UAUAGUU 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-1842-v1_5p
mirBase accessionMIMAT0047427
Sequence 
0- UUGGCUCUGCGAGGUCGGCUCA -22
Get sequence
Star sequence

Cpo-Mir-1842-v1_3p*
mirBase accessionMIMAT0047428
Sequence 
40- AGCAGGCCUGUCAGGGCGUUG -61
Get sequence
Variant

Cpo-Mir-1842-v2
Seed GGCUCUG
Precursor
(pre-Mir +30nt flank)		 
CCAUGCCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGCGAGGUCGGCUCAAGGUGGGUCUUGAUAUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACACAGCAGGUGC
Get precursor sequence
Structure
        10        20           30        40        50         
CCAUGCCUGUGAGGUUGG     C---|    UUG      CG     G      GGUGGG 
                  UGGUG    UGACG   GCUCUG  AGGUC GCUCAA      U
                  ACCAC    ACUGU   CGGGAC  UCCGG CGAGUU      C
CGUGGACGACACACGAGG     ACCC^    UG-      UG     A      AUAGUU 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-1842-v2_5p
mirBase accessionMIMAT0047427
Sequence 
0- UGGCUCUGCGAGGUCGGCUCAA -22
Get sequence
Star sequence

Cpo-Mir-1842-v2_3p*
mirBase accessionMIMAT0047428
Sequence 
38- GAGCAGGCCUGUCAGGGCGUUG -60
Get sequence