MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-1842

Family name MIR-1842 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-1842
Paralogues
Orthologues Bta-Mir-1842-v1  Cfa-Mir-1842-v1  Cpo-Mir-1842-v1  Dno-Mir-1842-v1  Mmr-Mir-1842-v1  Ocu-Mir-1842 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009160.1: 41809741-41809801 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1842-v1)		 Mir-1842-v1 CM009160.1: 41809741-41809801 [+] UCSC Ensembl
Mir-1842-v2 CM009160.1: 41809742-41809801 [+] UCSC Ensembl
Variant

Eca-Mir-1842-v1
Seed UGGCUCU
Precursor
(pre-Mir +30nt flank)		 
CCGGCGCCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGUGAGGUCGGCUCAAGGUGGGUCUGGAUAUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACGUGGCCGGUGC
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Structure
        10          20        30        40        50        60
CCGGCGCCUGUGAGGUU--|   GUGC     UUG      UG     G     AGGUGGG 
                   GGUG    UGACG   GCUCUG  AGGUC GCUCA       U
                   CCAC    ACUGU   CGGGAC  UCCGG CGAGU       C
CGUGGCCGGUGCACGAGGA^   ACCC     UG-      UG     A     UAUAGGU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-1842-v1_5p
mirBase accessionMIMAT0013055
Sequence 
0- UUGGCUCUGUGAGGUCGGCUCA -22
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Star sequence

Eca-Mir-1842-v1_3p*
mirBase accessionNone
Sequence 
40- AGCAGGCCUGUCAGGGCGUUG -61
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Variant

Eca-Mir-1842-v2
Seed GGCUCUG
Precursor
(pre-Mir +30nt flank)		 
CGGCGCCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGUGAGGUCGGCUCAAGGUGGGUCUGGAUAUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACGUGGCCGGUGC
Get precursor sequence
Structure
        10        20           30        40        50         
CGGCGCCUGUGAGGUUGG     C---|    UUG      UG     G      GGUGGG 
                  UGGUG    UGACG   GCUCUG  AGGUC GCUCAA      U
                  ACCAC    ACUGU   CGGGAC  UCCGG CGAGUU      C
CGUGGCCGGUGCACGAGG     ACCC^    UG-      UG     A      AUAGGU 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-1842-v2_5p
mirBase accessionMIMAT0013055
Sequence 
0- UGGCUCUGUGAGGUCGGCUCAA -22
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Star sequence

Eca-Mir-1842-v2_3p*
mirBase accessionNone
Sequence 
38- GAGCAGGCCUGUCAGGGCGUUG -60
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