MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-1842

Family name MIR-1842 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-1842
Paralogues
Orthologues Cfa-Mir-1842-v1  Cpo-Mir-1842-v1  Dno-Mir-1842-v1  Eca-Mir-1842-v1  Mmr-Mir-1842-v1  Ocu-Mir-1842 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037352.1: 1742695-1742755 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1842-v1)		 Mir-1842-v1 NC_037352.1: 1742695-1742755 [-] UCSC Ensembl
Mir-1842-v2 NC_037352.1: 1742695-1742754 [-] UCSC Ensembl
Mir-2382 NC_037352.1: 1742949-1743007 [-] UCSC Ensembl
Variant

Bta-Mir-1842-v1
Seed UGGCUCU
Precursor
(pre-Mir +30nt flank)		 
GCAGCGCCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGUGAGGUCGGCUCAAGGUGGGUCUGGAUGUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACGCAGCAGGGGC
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Structure
        10          20        30        40        50        60
GCAGCGCCUGUGAGGUU--|   GUGC     UUG      UG     G     AGGUGGG 
                   GGUG    UGACG   GCUCUG  AGGUC GCUCA       U
                   CCAC    ACUGU   CGGGAC  UCCGG CGAGU       C
CGGGGACGACGCACGAGGA^   ACCC     UG-      UG     A     UGUAGGU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-1842-v1_5p
mirBase accessionMIMAT0036969
Sequence 
0- UUGGCUCUGUGAGGUCGGCUCA -22
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Proposed targets TargetScanVert: bta-miR-1842
Star sequence

Bta-Mir-1842-v1_3p*
mirBase accessionNone
Sequence 
40- AGCAGGCCUGUCAGGGCGUUG -61
Get sequence
Variant

Bta-Mir-1842-v2
Seed GGCUCUG
Precursor
(pre-Mir +30nt flank)		 
CAGCGCCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGUGAGGUCGGCUCAAGGUGGGUCUGGAUGUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACGCAGCAGGGGC
Get precursor sequence
Structure
        10        20           30        40        50         
CAGCGCCUGUGAGGUUGG     C---|    UUG      UG     G      GGUGGG 
                  UGGUG    UGACG   GCUCUG  AGGUC GCUCAA      U
                  ACCAC    ACUGU   CGGGAC  UCCGG CGAGUU      C
CGGGGACGACGCACGAGG     ACCC^    UG-      UG     A      GUAGGU 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-1842-v2_5p
mirBase accessionMIMAT0036969
Sequence 
0- UGGCUCUGUGAGGUCGGCUCAA -22
Get sequence
Proposed targets TargetScanVert: bta-miR-1842
Star sequence

Bta-Mir-1842-v2_3p*
mirBase accessionNone
Sequence 
38- GAGCAGGCCUGUCAGGGCGUUG -60
Get sequence