| MirGeneDB ID | Cpo-Mir-1301 |
|---|
| Family name |
MIR-1301 (all species) |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-1301
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-1301
Cfa-Mir-1301
Cja-Mir-1301
Dno-Mir-1301
Eca-Mir-1301
Ete-Mir-1301
Hsa-Mir-1301
Mml-Mir-1301
Mmr-Mir-1301
Pab-Mir-1301
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_18: 7256957-7257016 [-]
UCSC
|
|---|
| Seed |
UGCAGCU |
|---|
Precursor
(pre-Mir +30nt flank) |
CAAGUGACCCCGAGAAUGGGGGUUGUGGGGGGUCACUCUAGGCACCGCAGCACUGUGCUGGGGAUGUUGCAGCUGCCUGGGAGUGACUUCACACCGUCCUCUCUGCCUCCAGGGUCACCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAGUGACCCCGAGAAU-- UU G - CC-| CUGUG
GGGGG GUG GGGGUCACU CUAGGCA GCAGCA C
CUCCU CAC CUUCAGUGA GGUCCGU CGUUGU U
CCCACUGGGACCUCCGUCU GC A G CGA^ AGGGG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cpo-Mir-1301_5p* (predicted) |
| mirBase accession | MIMAT0047419 |
|---|
| Sequence |
0- GGUCACUCUAGGCACCGCAGCA -22
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-1301_3p |
| mirBase accession | MIMAT0047420 |
|---|
| Sequence |
36- UUGCAGCUGCCUGGGAGUGACUUC -60
Get sequence
|
|---|
