MirGeneDB ID | Bta-Mir-1301 |
Family name |
MIR-1301 (all species) |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-1301
|
Paralogues |
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Orthologues |
Cfa-Mir-1301
Cja-Mir-1301
Cpo-Mir-1301
Dno-Mir-1301
Eca-Mir-1301
Ete-Mir-1301
Hsa-Mir-1301
Mml-Mir-1301
Mmr-Mir-1301
Pab-Mir-1301
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037338.1: 73985200-73985257 [+]
UCSC
Ensembl
|
Seed |
UGCAGCU |
Precursor (pre-Mir +30nt flank) |
CAAGCGACCCCUAGAGUGGGGGUUGUGGGGGGUCACUCUAGGCCCCGCAGCACUGUGCUGGAUGUUGCAGCUGCCUAGGAGUGAUUUCACACAGUCCUCUCGGCCUCAAGGGUCGCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAGCGACCCCUAGAGU-- GU G GG - CCC-| CUGU
GGGG UGUG G GUCACU CUAGGC GCAGCA G
CUCC ACAC C UAGUGA GAUCCG CGUUGU C
CCCGCUGGGAACUCCGGCU UG A UU G UCGA^ AGGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Star sequence |
Bta-Mir-1301_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGUCACUCUAGGCCCCGCAGCA -22
Get sequence
|
Mature sequence |
Bta-Mir-1301_3p |
mirBase accession | MIMAT0009958 |
Sequence |
34- UUGCAGCUGCCUAGGAGUGAUUUC -58
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-1301
|