| MirGeneDB ID | Cpo-Mir-1298 |
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| Family name |
MIR-1298 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-1298
|
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| Paralogues |
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| Orthologues |
Bta-Mir-1298
Cfa-Mir-1298
Cja-Mir-1298
Eca-Mir-1298
Ete-Mir-1298
Hsa-Mir-1298
Laf-Mir-1298
Mml-Mir-1298
Mmr-Mir-1298
Mmu-Mir-1298
Ocu-Mir-1298
Pab-Mir-1298
Rno-Mir-1298
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_46: 5210415-5210488 [-]
UCSC
|
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| Seed |
UCAUUCA |
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Precursor
(pre-Mir +30nt flank) |
AGAGCUAUUGGAGAGAUGAAGAGUUAAGAGUUCAUUCAGAUGUUCAGAUGUAUCCAAGUACCUAGUUAUUUGGCAAUAAAUACAUCUGGGCAACUGAUUGAACUUUUCGCUUUUCAUGAGUCGCCUGGAAUUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAGCUAUUGGAGAGAU--| U U A UCCAAGUACCUAG
GAAGAGU AAGAGUUCA UCAG UGUUCAGAUGUA U
CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU U
UCUUAAGGUCCGCUGAGUA^ C U A AAAUAACGGUUUA
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-1298_5p |
| mirBase accession | MIMAT0047417 |
|---|
| Sequence |
0- UUCAUUCAGAUGUUCAGAUGUA -22
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-1298_3p* |
| mirBase accession | MIMAT0047418 |
|---|
| Sequence |
52- CAUCUGGGCAACUGAUUGAACU -74
Get sequence
|
|---|
