MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-455

Family name MIR-455 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-455
Paralogues Bta-Mir-455-v1 
Orthologues Gja-Mir-455  Lch-Mir-455  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-v3)		 Mir-455-v2 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl
Mir-455-v3 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl
Mir-455-v1 NC_037335.1: 103437413-103437470 [+] UCSC Ensembl
Variant

Bta-Mir-455-v3
Seed GCAGUCC
Precursor
(pre-Mir +30nt flank)		 
CGAGUGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGUGGAACC
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Structure
        10          20        30        40        50         
CGAGUGCCCGCGCCCUU--| C   C UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CCAAGGUGCUACUGUAUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-455-v3_5p*
mirBase accessionMIMAT0003835
Sequence 
0- GUAUGUGCCUUUGGACUACAUC -22
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Proposed targets TargetScanVert: bta-miR-455-5p
Mature sequence

Bta-Mir-455-v3_3p
mirBase accessionMIMAT0003836
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
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Proposed targets TargetScanVert: bta-miR-455-3p
Variant

Bta-Mir-455-v1
Seed AUGUGCC
Precursor
(pre-Mir +30nt flank)		 
GAGUGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGUGGAAC
Get precursor sequence
Structure
        10          20        30        40        50        
GAGUGCCCGCGCCCUUC-  -|  C UG  G          U      A   C UGGAA 
                  CC UGG G  AG GUAUGUGCCU UGGACU CAU G     G
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     C
CAAGGUGCUACUGUAUCC  A^  C GU  A          U      C   C ACGAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-455-v1_5p
mirBase accessionMIMAT0003835
Sequence 
0- UAUGUGCCUUUGGACUACAUCG -22
Get sequence
Proposed targets TargetScanVert: bta-miR-455-5p
Star sequence

Bta-Mir-455-v1_3p*
mirBase accessionMIMAT0003836
Sequence 
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence
Proposed targets TargetScanVert: bta-miR-455-3p
Variant

Bta-Mir-455-v2
Seed CAGUCCA
Precursor
(pre-Mir +30nt flank)		 
CGAGUGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGUGGAACC
Get precursor sequence
Structure
        10          20        30        40        50         
CGAGUGCCCGCGCCCUU--| C   C UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CCAAGGUGCUACUGUAUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-455-v2_5p*
mirBase accessionMIMAT0003835
Sequence 
0- GUAUGUGCCUUUGGACUACAU -21
Get sequence
Proposed targets TargetScanVert: bta-miR-455-5p
Mature sequence

Bta-Mir-455-v2_3p
mirBase accessionMIMAT0003836
Sequence 
39- GCAGUCCAUGGGCAUAUACAC -60
Get sequence
Proposed targets TargetScanVert: bta-miR-455-3p