Mir-76

MirGeneDB ID

Bpl-Mir-76

Family name

MIR-76 (all species)

Species

Monogonont Rotifer 1 (Brachionus plicatilis)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-76 Aga-Mir-76 Agr-Mir-76 Asu-Mir-76 Ava-Mir-76-P11 Ava-Mir-76-P12 Bge-Mir-76 Bko-Mir-76 Cbr-Mir-76 Cel-Mir-76 Csc-Mir-76-P10a Csc-Mir-76-P10b Cte-Mir-76 Dan-Mir-76 Dgr-Mir-76 Dlo-Mir-76 Dma-Mir-76 Dme-Mir-76 Dmo-Mir-76 Dpu-Mir-76 Dsi-Mir-76 Dya-Mir-76 Eba-Mir-76 Efe-Mir-76 Esc-Mir-76 Gpa-Mir-76 Gsa-Mir-76 Hme-Mir-76 Hru-Mir-76 Isc-Mir-76 Lan-Mir-76-P1 Lan-Mir-76-P2 Lgi-Mir-76 Llo-Mir-76 Lpo-Mir-76-P3 Lpo-Mir-76-P4 Lpo-Mir-76-P5 Lpo-Mir-76-P6 Lpo-Mir-76-P7 Lpo-Mir-76-P8 Mgi-Mir-76 Mom-Mir-76 Npo-Mir-76 Obi-Mir-76 Ofu-Mir-76 Ovu-Mir-76 Pau-Mir-76 Pcr-Mir-76 Pdu-Mir-76 Pmi-Mir-76 Pve-Mir-76 Rph-Mir-76 Sma-Mir-76 Sme-Mir-76-P9a Sme-Mir-76-P9b Snu-Mir-76 Spu-Mir-76 Tca-Mir-76 Tur-Mir-76 War-Mir-76

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Bpl_ASM1027981)

QEOQ01000253.1: 314354-314431 [+] Ensembl

Seed

UCGUUGU

Precursor
(pre-Mir +30nt flank)

UCGUGUAUGCCUUAAAUGAUAAACUGCCUGCAGGUUUCACAGACUUCGAGCAUUUUAAAAAAAAUCUUAUGAAAACGAUAUGAUUGUUCGUUGUCUUCGAAACCUGCAUUUGGUUUAUCUUUCUCAGCCAUGAGUCUC

Get precursor sequence

Structure

        10          20        30        40        50        60        
UCGUGUAUGCCUUAAAU--|        CC          AC    UU      UUUUAAAAAAAAUCU 
                   GAUAAACUG  UGCAGGUUUC  AGAC  CGAGCA               U
                   CUAUUUGGU  ACGUCCAAAG  UCUG  GCUUGU               A
CUCUGAGUACCGACUCUUU^        UU          CU    UU      UAGUAUAGCAAAAGU 
      130       120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Bpl-Mir-76_5p*

mirBase accession

None

Sequence

0- CAGGUUUCACAGACUUCGAGCA -22

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Mature sequence

Bpl-Mir-76_3p

mirBase accession

None

Sequence

56- UUCGUUGUCUUCGAAACCUGCA -78

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