MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-7-P18b

Family name MIR-7 (all species)
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues Bko-Mir-7-P18a  Bko-Mir-7-P19a  Bko-Mir-7-P19b 
Orthologues Aae-Mir-7  Aga-Mir-7  Agr-Mir-7  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bpl-Mir-7-P18  Cin-Mir-7  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Esc-Mir-7  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Llo-Mir-7  Lpo-Mir-7  Mgi-Mir-7  Mom-Mir-7  Npo-Mir-7  Obi-Mir-7  Ofu-Mir-7  Ovu-Mir-7  Pau-Mir-7  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pmi-Mir-7  Pve-Mir-7  Rph-Mir-7  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spu-Mir-7  Sro-Mir-7  Tca-Mir-7  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) B. koreanus
Node of Origin (family) Bilateria
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic)		 PJRA01000435.1: 147438-147501 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-7-P18b)		 Mir-7-P18b PJRA01000435.1: 147438-147501 [+] Ensembl
Mir-7-P19a PJRA01000435.1: 147548-147621 [+] Ensembl
Seed GGAAGAC
Precursor
(pre-Mir +30nt flank)		 
UUAAAAGAACUAGCAAUAGAACAUGUAGGUUGGAAGACCAGUGAUUUUGUGUUCAGAUAAUUUAGAAUAACACAAAACUCUGAGUCUUCGAAACUUACGUUUUUUACUAACAACUAACCAAGAA
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Structure
        10          20        30          40        50        60 
UUAAAAGAACUAGCAAU--    C         G-      -|  UGA         CAGAUAA 
                   AGAA AUGUAGGUU  GAAGAC CAG   UUUUGUGUU       \
                   UUUU UGCAUUCAA  CUUCUG GUC   AAAACACAA       U
AAGAACCAAUCAACAAUCA    U         AG      A^  UC-         UAAGAUU 
  120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Mature sequence

Bko-Mir-7-P18b_5p
mirBase accessionNone
Sequence 
0- UGGAAGACCAGUGAUUUUGUGUU -23
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Star sequence

Bko-Mir-7-P18b_3p*
mirBase accessionNone
Sequence 
40- CACAAAACUCUGAGUCUUCGAAAC -64
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