Mir-7-P18

MirGeneDB ID

Bpl-Mir-7-P18

Family name

MIR-7 (all species)

Species

Monogonont Rotifer 1 (Brachionus plicatilis)

MiRBase ID

Paralogues

Bpl-Mir-7-P19

Orthologues

Aae-Mir-7 Aga-Mir-7 Agr-Mir-7 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bko-Mir-7-P18a Bko-Mir-7-P18b Bla-Mir-7 Cin-Mir-7 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Esc-Mir-7 Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Isc-Mir-7 Lan-Mir-7 Lgi-Mir-7 Llo-Mir-7 Lpo-Mir-7 Mgi-Mir-7 Mom-Mir-7 Npo-Mir-7 Obi-Mir-7 Ofu-Mir-7 Ovu-Mir-7 Pau-Mir-7 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pmi-Mir-7 Pve-Mir-7 Rph-Mir-7 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spu-Mir-7 Sro-Mir-7 Tca-Mir-7 War-Mir-7 Xbo-Mir-7

Node of Origin (locus)

B. plicatilis

Node of Origin (family)

Bilateria

Genome context
(Bpl_ASM1027981)

QEOQ01000688.1: 553513-553572 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-7-P18)

Mir-7-P19 QEOQ01000688.1: 553398-553465 [-] Ensembl
Mir-7-P18 QEOQ01000688.1: 553513-553572 [-] Ensembl

Seed

GGAAGAC

Precursor
(pre-Mir +30nt flank)

AUUAAUCCAAAUAAAAUAGAAUAUGUAAGCUGGAAGACCAGUGAUUUUGUGUUCAGAAAAUUCAAAACACAAGAUUCUGCGUCUUCGAACCUUACAUGUUUAUCUAACAACUAACAAUUU

Get precursor sequence

Structure

        10         20        30          40        50         
AUUAAUCCAAAUAAAAUA-           CUG-      -|  U           CAGAA 
                   GAAUAUGUAAG    GAAGAC CAG GAUUUUGUGUU     A
                   UUUGUACAUUC    CUUCUG GUC UUAGAACACAA     A
UUUAACAAUCAACAAUCUA           CAAG      C^  -           AACUU 
.       110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Bpl-Mir-7-P18_5p

mirBase accession

None

Sequence

0- UGGAAGACCAGUGAUUUUGUGUU -23

Get sequence

Star sequence

Bpl-Mir-7-P18_3p* (predicted)

mirBase accession

None

Sequence

37- CACAAGAUUCUGCGUCUUCGAAC -60

Get sequence