MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-204-P2

Family name MIR-204 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-204-1
Paralogues Ami-Mir-204-P1  Ami-Mir-204-P4 
Orthologues Aca-Mir-204-P2  Bta-Mir-204-P2  Cfa-Mir-204-P2  Cja-Mir-204-P2  Cli-Mir-204-P2  Cmi-Mir-204-P2  Cpi-Mir-204-P2  Cpo-Mir-204-P2  Dno-Mir-204-P2  Dre-Mir-204-P2  Ebu-Mir-204  Eca-Mir-204-P2  Ete-Mir-204-P2  Gga-Mir-204-P2  Gja-Mir-204-P2  Gmo-Mir-204-P2  Hsa-Mir-204-P2  Laf-Mir-204-P2  Lch-Mir-204-P2  Loc-Mir-204-P2  Mal-Mir-204-P2  Mdo-Mir-204-P2  Mml-Mir-204-P2  Mmr-Mir-204-P2  Mmu-Mir-204-P2  Mun-Mir-204-P2  Neu-Mir-204-P2  Oan-Mir-204-P2  Ocu-Mir-204-P2  Pab-Mir-204-P2  Pbv-Mir-204-P2  Pma-Mir-204  Rno-Mir-204-P2  Sha-Mir-204-P2  Spt-Mir-204-P2  Sto-Mir-204-P2  Tgu-Mir-204-P2  Tni-Mir-204-P2  Xla-Mir-204-P2a  Xla-Mir-204-P2b  Xtr-Mir-204-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713772.1: 27629970-27630029 [+] UCSC
Seed UCCCUUU
Precursor
(pre-Mir +30nt flank)		 
CAACAGUCUCUAUUCAUGUGACCUGUGGACUUCCCUUUGUCAUCCUAUGCCUGAGAAUAUAUGAAGGGGGCUGGGAAGGCAAAGGGACGUUCAAUUGUCAUCACUAGCAUCUUCUCUGAC
Get precursor sequence
Structure
        10          20        30        40        50          
CAACAGUCUCUAUUCAU--|    CUG     U          A     U    GAGAAUA 
                   GUGAC   UGGAC UCCCUUUGUC UCCUA GCCU       \
                   UACUG   ACUUG AGGGAAACGG AGGGU CGGG       U
CAGUCUCUUCUACGAUCAC^    UUA     C          A     -    GGAAGUA 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-204-P2_5p
mirBase accessionMIMAT0038225
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
Star sequence

Ami-Mir-204-P2_3p*
mirBase accessionMIMAT0038226
Sequence 
39- GCUGGGAAGGCAAAGGGACGU -60
Get sequence