MirGeneDB ID | Xla-Mir-726-P2 |
Family name |
MIR-726 (all species) |
Seed |
UCACUAC |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-726-P1
|
Orthologues |
Aca-Mir-726
Cpi-Mir-726
Dre-Mir-726
Gga-Mir-726
Gja-Mir-726
Loc-Mir-726
Mal-Mir-726
Spt-Mir-726
Tgu-Mir-726
Tni-Mir-726
Xtr-Mir-726
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Osteichthyes
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030739.1: 37731587-37731652 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACCUGUCCUGUCCCUGUGGGUGCUUGUCAGGAAUUCUGCUAGUUCUGAACUAUUCCAUGUUAGUAAGCAAAAGUUCACUACUAGCAGAACUCGGCCAUGUACCACACUUGCUGCCCAAAGGACAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CACCUGUCCUGUCCCUG-- - UU-| AG A UC AUUCCAUGU
UG GGUGC GUC GA UUCUGCUAGU UGAACU U
AC CCAUG CGG CU AAGACGAUCA ACUUGA A
GACAGGAAACCCGUCGUUC A UAC^ -- C UC AAACGAAUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xla-Mir-726-P2_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGAAUUCUGCUAGUUCUGAACU -22
Get sequence
|
Mature sequence |
Xla-Mir-726-P2_3p |
mirBase accession | None |
Sequence |
44- UUCACUACUAGCAGAACUCGGC -66
Get sequence
|