MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-726

Family name MIR-726 (all species)
Seed UCACUAC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-726  Cpi-Mir-726  Dre-Mir-726  Gga-Mir-726  Loc-Mir-726  Mal-Mir-726  Spt-Mir-726  Tgu-Mir-726  Tni-Mir-726  Xla-Mir-726-P1  Xla-Mir-726-P2  Xtr-Mir-726 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015160281.1: 327408-327468 [+]
Precursor
(pre-Mir +30nt flank)
CCCCUCCCCUCGCCUUCCGGGCUCUCGUCAGGAAUUCCGCUAGUUCUGAACUAUUUACAGUUGGAAAAAGUUCACUACUAGCAGAACUCGGCCGUGCGCCCCGUGCUCUUCGGGGGGGGGG
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Structure
        10          20         30        40        50        60
CCCCUCCCCUCGCCUUCC--    UCU -|  AG  A   C      UC      AUUUACA 
                    GGGC   C GUC  GA UUC GCUAGU  UGAACU       G
                    CCCG   G CGG  CU AAG CGAUCA  ACUUGA       U
GGGGGGGGGGCUUCUCGUGC    CGU C^  --  C   A      UC      AAAAGGU 
 .       110       100        90          80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Gja-Mir-726_5p*

mirBase accessionNone
Sequence
0- GGAAUUCCGCUAGUUCUGAACU -22
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Mature sequence

Gja-Mir-726_3p

mirBase accessionNone
Sequence
40- UUCACUACUAGCAGAACUCGG -61
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