MirGeneDB 2.1
MirGeneDB ID

Xbo-Mir-22-o1d

Family name MIR-22 (all species)
Seed CAGCUCC
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues Xbo-Mir-22-o1e 
Orthologues Bfl-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cgi-Mir-22-P1  Cte-Mir-22-P1  Efe-Mir-22-P1d  Esc-Mir-22-P1  Lan-Mir-22-P1  Lgi-Mir-22-P1  Npo-Mir-22-P1  Obi-Mir-22-P1  Ovu-Mir-22-P1  Pfl-Mir-22-P1  Sme-Mir-22-P1 
Node of Origin (locus) X. bocki
Node of Origin (family) Bilateria
Genome context
(Xbocki_plus)		 3C-assembly_contig_1887: 275115-275175 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCCCCCUCGUCGUAUGUGGGUCAUGUGACUUGCUGGUUGUGGUGUUGUCAGUUUCAUAUUAAAUCUGUCAGCUCCAUGUCUGGUGAGUCACAAGUCUCAUACUAUCAUCACAAACAAUA
Get precursor sequence
Structure
        10          20        30        40        50          
CUCCCCCCUCGUCGUAU--|    UCA       UG UG U     U    U  GUUUCAU 
                   GUGGG   UGUGACU  C  G UGUGG GUUG CA       \
                   UACUC   ACACUGA  G  C GUACC CGAC GU       A
AUAACAAACACUACUAUCA^    UGA       GU GU U     U    U  CUAAAUU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o2 gene in ambulacrarians.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To To To
Star sequence

Xbo-Mir-22-o1d_5p*
mirBase accessionNone
Sequence 
0- CUUGCUGGUUGUGGUGUUGUCA -22
Get sequence
Mature sequence

Xbo-Mir-22-o1d_3p
mirBase accessionNone
Sequence 
39- UCAGCUCCAUGUCUGGUGAGUC -61
Get sequence