MirGeneDB 2.1
MirGeneDB ID

Xbo-Mir-22-o1e

Family name MIR-22 (all species)
Seed CAGCUCC
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues Xbo-Mir-22-o1d 
Orthologues Bfl-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cgi-Mir-22-P1  Cte-Mir-22-P1  Esc-Mir-22-P1  Lan-Mir-22-P1  Lgi-Mir-22-P1  Npo-Mir-22-P1  Obi-Mir-22-P1  Ovu-Mir-22-P1  Pfl-Mir-22-P1  Sme-Mir-22-P1 
Node of Origin (locus) X. bocki
Node of Origin (family) Bilateria
Genome context
(Xbocki_plus)		 3C-assembly_contig_1901: 7143273-7143332 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGUAGGGGAGUGGUCUGUGGUUUAUACAUCUCACUAGCCUGGUCGCCGACAGUAUGUCAGUACUCUGUCAGCUCCAUGUCUGGUGAGGUGAAUAAAUCAUACAUACAUCAUUACAUUGC
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Structure
        10          20        30         40        50         
GGGUAGGGGAGUGGUCU--         A           -|C   UC  C    GUAUGU 
                   GUGGUUUAU CAUCUCACUAG C UGG  GC GACA      C
                   UACUAAAUA GUGGAGUGGUC G ACC  CG CUGU      A
CGUUACAUUACUACAUACA         A           U^U   U-  A    CUCAUG 
.       110       100        90        80         70        60
Deep sequencing
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CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o2 gene in ambulacrarians.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Star sequence

Xbo-Mir-22-o1e_5p*
mirBase accessionNone
Sequence 
0- CUCACUAGCCUGGUCGCCGACA -22
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Mature sequence

Xbo-Mir-22-o1e_3p
mirBase accessionNone
Sequence 
38- UCAGCUCCAUGUCUGGUGAGGU -60
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