Mir-2-o142a

MirGeneDB ID

Tur-Mir-2-o142a

Family name

MIR-2 (all species)

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-2-1

Paralogues

Tur-Mir-2-o142b Tur-Mir-2-o143

Orthologues

Gsp-Mir-2 Pca-Mir-2-o142 Ple-Mir-2

Node of Origin (locus)

T. urticae

Node of Origin (family)

Protostomia

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587310.1: 2525606-2525669 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-o142a)

Mir-2-o142b HE587310.1: 2523054-2523117 [-] Ensembl
Mir-71-P6b HE587310.1: 2523836-2523908 [-] Ensembl
Mir-71-P6a HE587310.1: 2524818-2524890 [+] Ensembl
Mir-2-o142a HE587310.1: 2525606-2525669 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

UAAUUUUGUUUACUUGAGCAUUCCUCCGAGUCGUCAAAGGGGUUGUGAAAUGUUCAUUGUAAGCAAAUCCAUAUCACAGCCAGCUUUGAUGAUUUUGAUAAAAUGCGAUAACCUGCGUUAAAAA

Get precursor sequence

Structure

        10         20         30        40         50        60 
UAAUUUUGUUUACUUGA-     CC-  C            G-|       A   UUCAUUGU 
                  GCAUU   UC GAGUCGUCAAAG  GGUUGUGA AUG        \
                  CGUAA   AG UUUAGUAGUUUC  CCGACACU UAC        A
AAAAAUUGCGUCCAAUAG     AAU  U            GA^       A   CUAAACGA 
  120       110       100        90        80        70