MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-727-P1

Family name MIR-727 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-727-P1-v1  Tni-Mir-727-P2-v1 
Orthologues Dre-Mir-727-P1-v1  Gmo-Mir-727-P1  Spt-Mir-727 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Osteichthyes
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
6: 6650138-6650200 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-727-P1-v2)
Mir-727-P1-v1 6: 6650136-6650202 [+] UCSC Ensembl
Mir-727-P1-v2 6: 6650138-6650200 [+] UCSC Ensembl
Mir-728-P1 6: 6651213-6651275 [+] UCSC Ensembl
Variant

Tni-Mir-727-P1-v2

Seed UUGAGGC
Precursor
(pre-Mir +30nt flank)
GUGAAGGAGGUCCAGCUGAGUGGCGCUUUCAGUCUUCAGUUCCUCCCAGCCCAUAAUGUUGUCAACACUGUGUUGAGGCGAGUUGAAGACUUAAAGCGCUGCUCAGAUUCGUGCCGCAGACCC
Get precursor sequence
Structure
        10          20        30        40         50        60 
GUGAAGGAGGUCCAGCU--|  UG       C        GU  CU  -    C AUAAUGUU 
                   GAG  GCGCUUU AGUCUUCA  UC  CC CAGC C        \
                   CUC  CGCGAAA UCAGAAGU  AG  GG GUUG G        G
CCCAGACGCCGUGCUUAGA^  GU       U        UG  C-  A    U UCACAACU 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-727-P1-v2_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUCUUCAGUUCCUCCCAGCCC -22
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Mature sequence

Tni-Mir-727-P1-v2_3p

mirBase accessionNone
Sequence
41- GUUGAGGCGAGUUGAAGACUUA -63
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Variant

Tni-Mir-727-P1-v1

Seed UGAGGCG
Precursor
(pre-Mir +30nt flank)
UGGUGAAGGAGGUCCAGCUGAGUGGCGCUUUCAGUCUUCAGUUCCUCCCAGCCCAUAAUGUUGUCAACACUGUGUUGAGGCGAGUUGAAGACUUAAAGCGCUGCUCAGAUUCGUGCCGCAGACCCGA
Get precursor sequence
Structure
        10          20        30        40         50        60   
UGGUGAAGGAGGUCCAG--|    UG       C        GU  CU  -    CCAUAAUGUU 
                   CUGAG  GCGCUUU AGUCUUCA  UC  CC CAGC          \
                   GACUC  CGCGAAA UCAGAAGU  AG  GG GUUG          G
AGCCCAGACGCCGUGCUUA^    GU       U        UG  C-  A    UGUCACAACU 
     120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-727-P1-v1_5p* (predicted)

mirBase accessionNone
Sequence
0- UCAGUCUUCAGUUCCUCCCAGCC -23
Get sequence
Mature sequence

Tni-Mir-727-P1-v1_3p

mirBase accessionNone
Sequence
44- UUGAGGCGAGUUGAAGACUUAAA -67
Get sequence