MirGeneDB ID | Tni-Mir-724-P2-v2 |
Family name |
MIR-724 (all species) |
Seed |
AAAGGGA |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-724-P1-v1
Tni-Mir-724-P1-v2
Tni-Mir-724-P2-v1
|
Orthologues |
Dre-Mir-724-P2-v1
Dre-Mir-724-P2-v2
Gmo-Mir-724-P2-v1
Gmo-Mir-724-P2-v2
Mal-Mir-724-P2-v1
Mal-Mir-724-P2-v2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Neopterygii
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
11: 9264427-9264485 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCAGACCAGAAACACCCAGCAGACUGGAUUUAAAGGGAAUUUGCGACUGUUACUCCAAACAUUAGAACAGCCACACCUUCCUUUUAAGAUCUUGCCUGCUGCUCUAUCUCACCGCCUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAGACCAGAAACACCC-- ACU -| UU CGA ACUCCA
AGCAG GGAUU UAAAGGGAA UG CUGUU A
UCGUC UCUAG AUUUUCCUU AC GACAA A
CUUCCGCCACUCUAUCUCG CGU A^ CC ACC GAUUAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Tni-Mir-724-P2-v2_5p |
mirBase accession | None |
Sequence |
0- UAAAGGGAAUUUGCGACUGUUA -22
Get sequence
|
Star sequence |
Tni-Mir-724-P2-v2_3p* (predicted) |
mirBase accession | None |
Sequence |
36- ACAGCCACACCUUCCUUUUAAGA -59
Get sequence
|