| MirGeneDB ID | Spt-Mir-1720 |
|---|---|
| Family name | MIR-1720 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1720 Ami-Mir-1720 Cli-Mir-1720 Cpi-Mir-1720 Gga-Mir-1720 Gja-Mir-1720 Pbv-Mir-1720 Tgu-Mir-1720 |
| Node of Origin (locus) | Diapsida |
| Node of Origin (family) | Diapsida |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014402.1: 9130413-9130475 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-1720) |
Mir-7-P1
QEPC01014402.1: 9130206-9130269 [+]
UCSC
Ensembl
Mir-1720 QEPC01014402.1: 9130413-9130475 [+] UCSC Ensembl |
| Seed | GAUCACC |
| Precursor (pre-Mir +30nt flank) |
GCGGGCUGCUGGGCACUCCUACUAUGUUUCCGAUCACCUCGGUUGUUGCUUUUGUGAGUGUCACACAGGAAAGCAACGAGAGGGCAGGUCUGGAACGUCUAUCCAUGUCGGCCAGAGAAAAGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCGGGCUGCUGGGCACUCCUACU-- C A--| GG GUGAGUG AUGUUUC GAUC CCUC UUGUUGCUUUU \ UGCAAGG CUGG GGAG AGCAACGAAAG U UGAAAAGAGACCGGCUGUACCUAUC U ACG^ -- GACACAC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Spt-Mir-1720_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CGAUCACCUCGGUUGUUGCUUUU -23
Get sequence
|
| Star sequence | Spt-Mir-1720_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- AAGCAACGAGAGGGCAGGUCUGG -63
Get sequence
|
