| MirGeneDB ID | Spt-Mir-1397 |
|---|---|
| Family name | MIR-1397 (all species) |
| Seed | GCAUUGC |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1397 Ami-Mir-1397 Cpi-Mir-1397 Gga-Mir-1397 Gja-Mir-1397 Oan-Mir-1397 Pbv-Mir-1397 Sha-Mir-1397 Tgu-Mir-1397 |
| Node of Origin (locus) | Amniota |
| Node of Origin (family) | Amniota |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01012497.1: 499713-499770 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UAAGUCACUGACAGAGUACGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGGUCGUAACAUGAUGUAACCCAACGCAGCAUGAUGCAAGCAUUGUGAAAAAUUGGAGAUUUAAAGet precursor sequence |
| Structure | 10 20 30 40 50 UAAGUCACUGACAGAGU--| G CA AC CUGGU ACGAUGU UGCAUUG UUGCG GGGUUACAUCA C UGUUACG ACGUAGU GACGC CCCAAUGUAGU G AAAUUUAGAGGUUAAAAAG^ A AC AA ACAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Spt-Mir-1397_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGCAUUGCGACGGGUUACAUCA -22
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|
| Star sequence | Spt-Mir-1397_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- AUGUAACCCAACGCAGCAUGAU -58
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|
