MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-1397

Family name MIR-1397 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1397  Ami-Mir-1397  Cpi-Mir-1397  Gga-Mir-1397  Neu-Mir-1397  Oan-Mir-1397  Pbv-Mir-1397  Sha-Mir-1397  Spt-Mir-1397  Tgu-Mir-1397 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015174328.1: 240982-241039 [-]
Seed GCAUUGC
Precursor
(pre-Mir +30nt flank)		 
UAAUUCACUGACAACCUGCGAUGUGUGCAUUGCAUUGCGAUGGGUUACAUCACUGGUCAUAACAUGAUGUAACCCAACGCAGCAUGAUGUAAAUGUCGUGAUACAUUGGAGAUUUUAA
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Structure
        10          20        30        40        50        
UAAUUCACUGACAACCU--|      G       CA     A            CUGGU 
                   GCGAUGU UGCAUUG  UUGCG UGGGUUACAUCA     C
                   UGCUGUA AUGUAGU  GACGC ACCCAAUGUAGU     A
AAUUUUAGAGGUUACAUAG^      A       AC     A            ACAAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Gja-Mir-1397_5p (predicted)
mirBase accessionNone
Sequence 
0- UGCAUUGCGAUGGGUUACAUCA -22
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Star sequence

Gja-Mir-1397_3p*
mirBase accessionNone
Sequence 
36- AUGUAACCCAACGCAGCAUGAU -58
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