MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-708

Family name MIR-708 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-708
Paralogues
Orthologues Bta-Mir-708  Cfa-Mir-708  Cja-Mir-708  Cpo-Mir-708  Dno-Mir-708  Eca-Mir-708  Ete-Mir-708  Hsa-Mir-708  Laf-Mir-708  Mml-Mir-708  Mmr-Mir-708  Mmu-Mir-708  Ocu-Mir-708  Pab-Mir-708 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr1: 161221256-161221324 [+] UCSC Ensembl
Seed AGGAGCU
Precursor
(pre-Mir +30nt flank)
ACAGCUGUGUUUGAAAUGGUGACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUAGAUGACUUGCACUUGAACACAACUAGACUGUGAGCUUCUAGAGGGCAGGGGCCUUACCCUAGUCAUCUCUCU
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Structure
        10          20        30        40        50        60    
ACAGCUGUGUUUGAAAU--|  GA        A           A     C  GGGGUAGAUGAC 
                   GGU  CUGCCCUC AGGAGCUUACA UCUAG UG            \
                   CCG  GACGGGAG UCUUCGAGUGU AGAUC AC            U
UCUCUCUACUGAUCCCAUU^  GG        A           C     A  ACAAGUUCACGU 
       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-708_5p

mirBase accessionMIMAT0005331
Sequence
0- AAGGAGCUUACAAUCUAGCUGGG -23
Get sequence
Proposed targets microrna.org: MIMAT0005331
TargetScanVert: rno-miR-708-5p
miRDB: MIMAT0005331
Co-mature sequence

Rno-Mir-708_3p

mirBase accessionMIMAT0005332
Sequence
46- CAACUAGACUGUGAGCUUCUAGA -69
Get sequence
Proposed targets microrna.org: MIMAT0005332
TargetScanVert: rno-miR-708-3p
miRDB: MIMAT0005332