MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-675

Family name MIR-675 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-675
Paralogues
Orthologues Cfa-Mir-675  Cja-Mir-675  Cpo-Mir-675  Dno-Mir-675  Eca-Mir-675  Hsa-Mir-675  Laf-Mir-675  Mml-Mir-675  Mmr-Mir-675  Mmu-Mir-675  Neu-Mir-675  Pab-Mir-675  Sha-Mir-675 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(rn6)
chr1: 215745995-215746050 [-] UCSC Ensembl
Seed UGUAUGC
Precursor
(pre-Mir +30nt flank)
CAUUCCCAUGAGGCACUGCGGCCCAGGGACUGGUGCGGAAAGGGCCCACAGUGGACUUGGUGCACUGUAUGCCCUAACCGCUCAGUCCCUGGGUCUGGCAUGACAGACAGAACAUU
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Structure
        10          20        30        40        50        
CAUUCCCAUGAGGCACUGC--|             U    AA     CC      GACU 
                     GGCCCAGGGACUGG GCGG  AGGGC  ACAGUG    \
                     CUGGGUCCCUGACU CGCC  UCCCG  UGUCAC    U
UUACAAGACAGACAGUACGGU^             -    AA     UA      GUGG 
    110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
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Star sequence

Rno-Mir-675_5p*

mirBase accessionMIMAT0012841
Sequence
0- UGGUGCGGAAAGGGCCCACAGUG -23
Get sequence
Proposed targets microrna.org: MIMAT0012841
TargetScanVert: rno-miR-675-5p
miRDB: MIMAT0012841
Mature sequence

Rno-Mir-675_3p

mirBase accessionMIMAT0017363
Sequence
34- CUGUAUGCCCUAACCGCUCAGU -56
Get sequence
Proposed targets TargetScanVert: rno-miR-675-3p
miRDB: MIMAT0017363