MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-330

Family name MIR-330 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-330
Paralogues
Orthologues Bta-Mir-330-v1  Cfa-Mir-330  Cja-Mir-330-v1  Cpo-Mir-330-v1  Dno-Mir-330-v1  Eca-Mir-330-v1  Ete-Mir-330-v1  Hsa-Mir-330-v1  Laf-Mir-330  Mml-Mir-330-v1  Mmr-Mir-330-v1  Mmu-Mir-330-v1  Ocu-Mir-330-v1  Pab-Mir-330-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr1: 80092701-80092764 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-330-v1)		 Mir-330-v1 chr1: 80092701-80092764 [+] UCSC Ensembl
Mir-330-v2 chr1: 80092701-80092764 [+] UCSC Ensembl
Variant

Rno-Mir-330-v1
Seed CUCUGGG
Precursor
(pre-Mir +30nt flank)		 
GUGCUGUGUGACCCUUUGGCGAUCUCUGCCUCUCUGGGCCUGUGUCUUAGGCUCUUCAAGAUCUAACGAGCAAAGCACAGGGCCUGCAGAGAGGUAGCGCUCUGCUCCUUACUCGCCUGAUCAU
Get precursor sequence
Structure
        10              20        30          40         50        60 
GUGCUGUGUGACCCUUU------|   AUCU           --    -    U   AG   CUUCAAG 
                       GGCG    CUGCCUCUCUG  GGCC UGUG CUU  GCU       \
                       UCGC    GAUGGAGAGAC  CCGG ACAC GAA  CGA       A
UACUAGUCCGCUCAUUCCUCGUC^   ----           GU    G    -   A-   GCAAUCU 
  120       110       100            90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-330-v1_5p
mirBase accessionMIMAT0004641
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCU -23
Get sequence
Proposed targets microrna.org: MIMAT0004641
TargetScanVert: rno-miR-330-5p
miRDB: MIMAT0004641
Star sequence

Rno-Mir-330-v1_3p*
mirBase accessionMIMAT0000568
Sequence 
40- CAAAGCACAGGGCCUGCAGAGAGG -64
Get sequence
Proposed targets microrna.org: MIMAT0000568
TargetScanVert: rno-miR-330-3p
miRDB: MIMAT0000568
Variant

Rno-Mir-330-v2
Seed CUCUGGG
Precursor
(pre-Mir +30nt flank)		 
GUGCUGUGUGACCCUUUGGCGAUCUCUGCCUCUCUGGGCCUGUGUCUUAGGCUCUUCAAGAUCUAACGAGCAAAGCACAGGGCCUGCAGAGAGGUAGCGCUCUGCUCCUUACUCGCCUGAUCAU
Get precursor sequence
Structure
        10              20        30          40         50        60 
GUGCUGUGUGACCCUUU------|   AUCU           --    -    U   AG    UUCAAG 
                       GGCG    CUGCCUCUCUG  GGCC UGUG CUU  GCUC      \
                       UCGC    GAUGGAGAGAC  CCGG ACAC GAA  CGAG      A
UACUAGUCCGCUCAUUCCUCGUC^   ----           GU    G    -   A-    CAAUCU 
  120       110       100            90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-330-v2_5p
mirBase accessionMIMAT0004641
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCUC -24
Get sequence
Proposed targets microrna.org: MIMAT0004641
TargetScanVert: rno-miR-330-5p
miRDB: MIMAT0004641
Star sequence

Rno-Mir-330-v2_3p*
mirBase accessionMIMAT0000568
Sequence 
39- GCAAAGCACAGGGCCUGCAGAGAGG -64
Get sequence
Proposed targets microrna.org: MIMAT0000568
TargetScanVert: rno-miR-330-3p
miRDB: MIMAT0000568