MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-130-P4o3

Family name MIR-130 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-130e
Paralogues Pma-Mir-130-P1o1  Pma-Mir-130-P1o2  Pma-Mir-130-P1o3  Pma-Mir-130-P2o1  Pma-Mir-130-P2o2  Pma-Mir-130-P4o1 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NW_022638183.1: 736525-736588 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4o3)		 Mir-130-P1o3 NW_022638183.1: 735210-735270 [+] UCSC Ensembl
Mir-130-P4o3 NW_022638183.1: 736525-736588 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
ACCCCUCACCAAACUCCUCUGCAGUCCGGCACCUUUUCAAGUUUGCACUCCUAUGGCGCUCCGUAUGAAGCAGUGCAAUAUUGAAAAAGGGUACGGGACUGCGGGAGCGCGGCCGGGGCCACGG
Get precursor sequence
Structure
        10          20         30         40        50        60
ACCCCUCACCAAACUCC--        -   GCA  -|      GU       C  AUGGCGC 
                   UCUGCAGU CCG   CC UUUUCAA  UUGCACU CU       U
                   GGGCGUCA GGC   GG AAAAGUU  AACGUGA GA       C
GGCACCGGGGCCGGCGCGA        G   AUG  A^      AU       C  AGUAUGC 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-130-P4o3_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACCUUUUCAAGUUUGCACUCCU -22
Get sequence
Mature sequence

Pma-Mir-130-P4o3_3p
mirBase accessionMIMAT0019453
Sequence 
40- CAGUGCAAUAUUGAAAAAGGGUAC -64
Get sequence