MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-130-P2o2

Family name MIR-130 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-301a
Paralogues Pma-Mir-130-P1o1  Pma-Mir-130-P1o2  Pma-Mir-130-P1o3  Pma-Mir-130-P2o1  Pma-Mir-130-P4o1  Pma-Mir-130-P4o3 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046106.1: 983107-983167 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2o2)		 Mir-130-P2o2 NC_046106.1: 983107-983167 [-] UCSC Ensembl
Mir-130-P1o2 NC_046106.1: 983243-983302 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CGUGUGGCAACUUGCAAGCCCCUGCUGGAGGCUCUGACACCAUUGCACUACUGUACGCAAUGGUGAGCAGUGCAAUUGUAUUGUCAAAGCUUCCGUCGGUGAGCCCAUGCGAGAUUCCAUU
Get precursor sequence
Structure
        10        20         30           40        50         
CGUGUGGCAACUUGCAAGCCC-   C        C    ---| C        A  GUACGC 
                      CUG UGGAGGCU UGAC   AC AUUGCACU CU      \
                      GGC GCCUUCGA ACUG   UG UAACGUGA GA      A
UUACCUUAGAGCGUACCCGAGU   U        A    UUA^ U        C  GUGGUA 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-130-P2o2_5p*
mirBase accessionNone
Sequence 
0- GCUCUGACACCAUUGCACUACU -22
Get sequence
Mature sequence

Pma-Mir-130-P2o2_3p
mirBase accessionMIMAT0019536
Sequence 
37- CAGUGCAAUUGUAUUGUCAAAGCU -61
Get sequence