Mir-130-P1o1

MirGeneDB ID

Pma-Mir-130-P1o1

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-130a

Paralogues

Pma-Mir-130-P1o2 Pma-Mir-130-P1o3 Pma-Mir-130-P2o1 Pma-Mir-130-P2o2 Pma-Mir-130-P4o1 Pma-Mir-130-P4o3

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046073.1: 9804247-9804309 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P1o1)

Mir-130-P1o1 NC_046073.1: 9804247-9804309 [+] UCSC Ensembl
Mir-130-P2o1 NC_046073.1: 9811592-9811655 [+] UCSC Ensembl
Mir-130-P4o1 NC_046073.1: 9819109-9819168 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAAAGUGGCUGCAGCUUCUGUGGGCCAAAGCCCUUUUUGUGUUGUACUACUGUCCGCUAUGGUGCUGAGCAGUGCAAUAUUAAAAAGGGCAUUGGCUGGCAGAUCAACGUCGCCAUCGACAU

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Structure

        10          20        30         40        50        60
CAAAAGUGGCUGCAGCU--     G      A         -|         A  GUCCGCU 
                   UCUGU GGCCAA GCCCUUUUU GUGUUGUACU CU       A
                   AGACG UCGGUU CGGGAAAAA UAUAACGUGA GA       U
UACAGCUACCGCUGCAACU     G      A         U^         C  GUCGUGG 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-130-P1o1_5p*

mirBase accession

MIMAT0019454

Sequence

0- GCCCUUUUUGUGUUGUACUACU -22

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Mature sequence

Pma-Mir-130-P1o1_3p

mirBase accession

MIMAT0019455

Sequence

40- CAGUGCAAUAUUAAAAAGGGCAU -63

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