MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-130-P2o1

Family name MIR-130 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-301b
Paralogues Pma-Mir-130-P1o1  Pma-Mir-130-P1o2  Pma-Mir-130-P1o3  Pma-Mir-130-P2o2  Pma-Mir-130-P4o1  Pma-Mir-130-P4o3 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046073.1: 9811592-9811655 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2o1)		 Mir-130-P1o1 NC_046073.1: 9804247-9804309 [+] UCSC Ensembl
Mir-130-P2o1 NC_046073.1: 9811592-9811655 [+] UCSC Ensembl
Mir-130-P4o1 NC_046073.1: 9819109-9819168 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
GACCCCUGACCCGGCCGGCUGCCAGCAGACGCUCUGACAGCGUUGCACUACUGUGCAGCCUGCAGCAAGCAGUGCAAUAGCAUUGUCAAAGCAUCUGAGGGCAGCGCUGCUCACUCGUUCCCUU
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Structure
        10          20        30          40         50          
GACCCCUGACCCGGCCG--      AG    C   C     --  -|       A  GUGCAGC 
                   GCUGCC  CAGA GCU UGACA  GC GUUGCACU CU       \
                   CGACGG  GUCU CGA ACUGU  CG UAACGUGA GA       C
UUCCCUUGCUCACUCGUCG      GA    A   A     UA  A^       C  ACGACGU 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-130-P2o1_5p*
mirBase accessionNone
Sequence 
0- GCUCUGACAGCGUUGCACUACU -22
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Mature sequence

Pma-Mir-130-P2o1_3p
mirBase accessionMIMAT0019537
Sequence 
39- CAGUGCAAUAGCAUUGUCAAAGCAU -64
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