Mir-130-P1o2

MirGeneDB ID

Pma-Mir-130-P1o2

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-130b

Paralogues

Pma-Mir-130-P1o1 Pma-Mir-130-P1o3 Pma-Mir-130-P2o1 Pma-Mir-130-P2o2 Pma-Mir-130-P4o1 Pma-Mir-130-P4o3

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046106.1: 983243-983302 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P1o2)

Mir-130-P2o2 NC_046106.1: 983107-983167 [-] UCSC Ensembl
Mir-130-P1o2 NC_046106.1: 983243-983302 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUCGACGGAAGCUCAGCGUCCCCCCGCUGUCCUUUUUAUAUUGUGCUACUGUGUCCUCUGCGAAGUAGUGCAAUGUGAAAAGGGCAUUGGGGAGUCGCGCCUUUCGCCUGGACUCAUC

Get precursor sequence

Structure

        10           20        30        40        50         
UUUUCGACGGAAGCUCA---|  UCC     C                UG     GUGUCC 
                    GCG   CCCCG UGUCCUUUUUAUAUUG  CUACU      \
                    CGC   GGGGU ACGGGAAAAGUGUAAC  GAUGA      U
CUACUCAGGUCCGCUUUCCG^  UGA     U                GU     AGCGUC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a single snp between the assembled genome and the miRBase entry.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-130-P1o2_5p*

mirBase accession

None

Sequence

0- GUCCUUUUUAUAUUGUGCUACU -22

Get sequence

Mature sequence

Pma-Mir-130-P1o2_3p

mirBase accession

MIMAT0019456

Sequence

37- UAGUGCAAUGUGAAAAGGGCAUU -60

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