MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-130-P1o2

Family name MIR-130 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-130b
Paralogues Pma-Mir-130-P1o1  Pma-Mir-130-P1o3  Pma-Mir-130-P2o1  Pma-Mir-130-P2o2  Pma-Mir-130-P4o1  Pma-Mir-130-P4o3 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046106.1: 983243-983302 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1o2)		 Mir-130-P2o2 NC_046106.1: 983107-983167 [-] UCSC Ensembl
Mir-130-P1o2 NC_046106.1: 983243-983302 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UUUUCGACGGAAGCUCAGCGUCCCCCCGCUGUCCUUUUUAUAUUGUGCUACUGUGUCCUCUGCGAAGUAGUGCAAUGUGAAAAGGGCAUUGGGGAGUCGCGCCUUUCGCCUGGACUCAUC
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Structure
        10           20        30        40        50         
UUUUCGACGGAAGCUCA---|  UCC     C                UG     GUGUCC 
                    GCG   CCCCG UGUCCUUUUUAUAUUG  CUACU      \
                    CGC   GGGGU ACGGGAAAAGUGUAAC  GAUGA      U
CUACUCAGGUCCGCUUUCCG^  UGA     U                GU     AGCGUC 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a single snp between the assembled genome and the miRBase entry.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-130-P1o2_5p*
mirBase accessionNone
Sequence 
0- GUCCUUUUUAUAUUGUGCUACU -22
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Mature sequence

Pma-Mir-130-P1o2_3p
mirBase accessionMIMAT0019456
Sequence 
37- UAGUGCAAUGUGAAAAGGGCAUU -60
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