MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1996-o2

Family name MIR-1996 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-1996-o1 
Orthologues Cte-Mir-1996  Dgr-Mir-1996  Efe-Mir-1996-P2  Snu-Mir-1996 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 189982418-189982474 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1996-o2)		 Mir-1996-o2 JAPTHN010000001.1: 189982418-189982474 [-] Ensembl
Mir-1996-o1 JAPTHN010000001.1: 189983201-189983260 [-] Ensembl
Seed UCAAGUG
Precursor
(pre-Mir +30nt flank)		 
GUUGGAGUGCUCCCAAUGUGUUUGGUGUGUCUCAAGUGAGGUCAGUGCUACUGUUCUUGAACCAGGGGCACUGCCCUCAACUGAAGCACUCCCUGACACACCCUCAUCUCAUCACCA
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Structure
        10         20         30        40        50        
GUUGGAGUGCUCCCAAU-     U-| U   UC   AG     U      UA  GUUCU 
                  GUGUU  GG GUG  UCA  UGAGG CAGUGC  CU     \
                  CACAG  CC CAC  AGU  ACUCC GUCACG  GA     U
ACCACUACUCUACUCCCA     UC^ U   GA   CA     C      GG  CCAAG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1996-o2_5p
mirBase accessionNone
Sequence 
0- CUCAAGUGAGGUCAGUGCUACU -22
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Star sequence

Pdu-Mir-1996-o2_3p*
mirBase accessionNone
Sequence 
35- GGGCACUGCCCUCAACUGAAGC -57
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