| MirGeneDB ID | Pab-Mir-598 |
|---|
| Family name |
MIR-598 (all species) |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cja-Mir-598
Cpo-Mir-598
Ete-Mir-598
Hsa-Mir-598
Laf-Mir-598
Mml-Mir-598
Mmr-Mir-598
Mmu-Mir-598
Rno-Mir-598-P1
Rno-Mir-598-P2
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054686.2: 11509596-11509654 [+]
UCSC
Ensembl
|
|---|
| Seed |
ACGUCAU |
|---|
Precursor
(pre-Mir +30nt flank) |
GAAGAUGGCUUGAUGAUGCUGCUGAUGCUGGCGGUGAUCCCGAUGGUGUGAGCUGGAAAUGGGGUGCUACGUCAUCGUUGUCAUCGUCAUCAUCAUCAUCCGAGCAGCCACCAGAUAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAAGAUGGCUUGAUGAUGC--| C C CC GU G UGGAA
UG UGAUG UGGCGGUGAU CGAUG GU AGC A
AC ACUAC ACUGCUACUG GCUAC CA UCG U
CGAUAGACCACCGACGAGCCU^ U U UU UG - UGGGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pab-Mir-598_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GCGGUGAUCCCGAUGGUGUGAGC -23
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-598_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UACGUCAUCGUUGUCAUCGUCA -59
Get sequence
|
|---|
